Energy-Aware Loop Scheduling and Assignment for Multi-Core, Multi-Functional-Unit Architecture. - Meikang Qiu; Meiqin Liu 001; Hao Li; Hung-Chung Huang; Wenyuan Li 006; Jiande Wu (J. Signal Process. Syst., 2009)

Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. - Wenyuan Li 006; Min Xu; Xianghong Jasmine Zhou (J. Biomed. Informatics, 2010)

Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. - Wenyuan Li 006; Chun-Chi Liu; Tong Zhang 001; Haifeng Li; Michael S. Waterman; Xianghong Jasmine Zhou (PLoS Comput. Biol., 2011)

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. - Wenyuan Li 006; Shi-Hua Zhang; Chun-Chi Liu; Xianghong Jasmine Zhou (Bioinform., 2012)

Integrating many co-splicing networks to reconstruct splicing regulatory modules. - Chao Dai; Wenyuan Li 006; Juan Liu; Xianghong Jasmine Zhou (BMC Syst. Biol., 2012)

Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling. - Wenyuan Li 006; Chao Dai; Chun-Chi Liu; Xianghong Jasmine Zhou (J. Comput. Biol., 2012)

DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. - Chun-Chi Liu; Yu-Ting Tseng; Wenyuan Li 006; Chia-Yu Wu; Ilya Mayzus; Andrey Rzhetsky; Fengzhu Sun; Michael S. Waterman; Jeremy J. W. Chen; Preet M. Chaudhary; Joseph Loscalzo; Edward Crandall; et al. (Nucleic Acids Res., 2014)

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. - Wenyuan Li 006; Ke Gong; Qingjiao Li; Frank Alber; Xianghong Jasmine Zhou (Bioinform., 2015)

IIIDB: a database for isoform-isoform interactions and isoform network modules. - Yu-Ting Tseng; Wenyuan Li 006; Ching-Hsien Chen; Shi-Hua Zhang; Jeremy J. W. Chen; Xianghong Jasmine Zhou; Chun-Chi Liu (BMC Genom., 2015)

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. - Jianrong Li; Chuan-Hu Sun; Wenyuan Li 006; Rou-Fang Chao; Chieh-Chen Huang; Xianghong Jasmine Zhou; Chun-Chi Liu (Nucleic Acids Res., 2016)

Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis. - Ran Hu; Xianghong Jasmine Zhou; Wenyuan Li 006 (J. Comput. Biol., 2022)