Single-Cell Multimodal Prediction via Transformers. - Wenzhuo Tang; Hongzhi Wen; Renming Liu; Jiayuan Ding; Wei Jin 009; Yuying Xie 001; Hui Liu 031; Jiliang Tang (CIKM, 2023)

Single Cells Are Spatial Tokens: Transformers for Spatial Transcriptomic Data Imputation. - Hongzhi Wen; Wenzhuo Tang; Wei Jin 009; Jiayuan Ding; Renming Liu; Feng Shi; Yuying Xie 001; Jiliang Tang (CoRR, 2023)

CellPLM: Pre-training of Cell Language Model Beyond Single Cells. - Hongzhi Wen; Wenzhuo Tang; Xinnan Dai; Jiayuan Ding; Wei Jin 009; Yuying Xie 001; Jiliang Tang (ICLR, 2024)

Position: Graph Foundation Models Are Already Here. - Haitao Mao; Zhikai Chen; Wenzhuo Tang; Jianan Zhao 002; Yao Ma 001; Tong Zhao 003; Neil Shah; Mikhail Galkin 001; Jiliang Tang (ICML, 2024)

Sub-Graph Based Diffusion Model for Link Prediction. - Hang Li 007; Wei Jin 009; Geri Skenderi; Harry Shomer; Wenzhuo Tang; Wenqi Fan; Jiliang Tang (LoG, 2024)

Graph Foundation Models. - Haitao Mao; Zhikai Chen; Wenzhuo Tang; Jianan Zhao 002; Yao Ma 001; Tong Zhao 003; Neil Shah; Mikhail Galkin 001; Jiliang Tang (CoRR, 2024)

Graph Machine Learning in the Era of Large Language Models (LLMs). - Wenqi Fan; Shijie Wang 002; Jiani Huang 001; Zhikai Chen; Yu Song; Wenzhuo Tang; Haitao Mao; Hui Liu 031; Xiaorui Liu; Dawei Yin; Qing Li 001 (CoRR, 2024)

Cross-Domain Graph Data Scaling: A Showcase with Diffusion Models. - Wenzhuo Tang; Haitao Mao; Danial Dervovic; Ivan Brugere; Saumitra Mishra; Yuying Xie 001; Jiliang Tang (CoRR, 2024)

SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology. - Jiayuan Ding; Lingxiao Li; Qiaolin Lu; Julian Venegas; Yixin Wang 003; Lidan Wu; Wei Jin 009; Hongzhi Wen; Renming Liu; Wenzhuo Tang; Xinnan Dai; Zhaoheng Li; et al. (J. Comput. Biol., 2024)

Deep Learning in Single-cell Analysis. - Dylan Molho; Jiayuan Ding; Wenzhuo Tang; Zhaoheng Li; Hongzhi Wen; Yixin Wang 003; Julian Venegas; Wei Jin 009; Renming Liu; Runze Su; Patrick Danaher; Robert Yang; et al. (ACM Trans. Intell. Syst. Technol., 2024)