Rapid calculation of first and second derivatives of conformational energy with respect to dihedral angles for proteins general recurrent equations. - H. Abe; Werner Braun; Toshiyuki Noguti; Nobuhiro Go (Comput. Chem., 1984)

GEOM: A new tool for molecular modelling based on distance geometry calculations with NMR data. - Michel F. Sanner; Armin Widmer; Hans Senn; Werner Braun (J. Comput. Aided Mol. Des., 1989)

Minimization of empirical energy functions in proteins including hydrophobic surface area effects. - Berthold Von Freyberg; Werner Braun (J. Comput. Chem., 1993)

Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. - Robert Fraczkiewicz; Werner Braun (J. Comput. Chem., 1998)

MASIA: recognition of common patterns and properties in multiple aligned protein sequences. - Hongyao Zhu; Catherine H. Schein; Werner Braun (Bioinform., 2000)

Data mining of sequences and 3D structures of allergenic proteins. - Ovidiu Ivanciuc; Catherine H. Schein; Werner Braun (Bioinform., 2002)

Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. - Catherine H. Schein; Numan Özgün; Tadahide Izumi; Werner Braun (BMC Bioinform., 2002)

Identifying Property Based Sequence Motifs in Protein Families and Superfamilies: Application to DNase-1 Related Endonucleases. - Venkatarajan S. Mathura; Catherine H. Schein; Werner Braun (Bioinform., 2003)

SDAP: database and computational tools for allergenic proteins. - Ovidiu Ivanciuc; Catherine H. Schein; Werner Braun (Nucleic Acids Res., 2003)

InterProSurf: a web server for predicting interacting sites on protein surfaces. - Surendra S. Negi; Catherine H. Schein; Numan Özgün; Trevor D. Power; Werner Braun (Bioinform., 2007)

AusweisApp and the eID Service/Server - Online Identification Finally more Secure. - Werner Braun; Dirk Arendt (ISSE, 2010)

Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity. - Surendra S. Negi; Werner Braun (Bioinform., 2017)