Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains. - Konrad Zych; Yang Li 036; K. Joeri van der Velde; Ronny Joosen; Wilco Ligterink; Ritsert C. Jansen; Danny Arends (BMC Bioinform., 2015)

CyLineUp: A Cytoscape app for visualizing data in network small multiples. - Maria Cecília D. Costa; Thijs Slijkhuis; Wilco Ligterink; Henk W. M. Hilhorst; Dick de Ridder; Harm Nijveen (F1000Research, 2016)

A guided network estimation approach using multi-omic information. - Georgios Bartzis; Carel F. W. Peeters; Wilco Ligterink; Fred A. van Eeuwijk (BMC Bioinform., 2024)