A Hidden Markov Model for de Novo Peptide Sequencing. - Bernd Fischer 003; Volker Roth 001; Joachim M. Buhmann; Jonas Grossmann; Sacha Baginsky; Wilhelm Gruissem; Franz F. Roos; Peter Widmayer (NIPS, 2004)

Semi-supervised LC/MS alignment for differential proteomics. - Bernd Fischer 003; Jonas Grossmann; Volker Roth 001; Wilhelm Gruissem; Sacha Baginsky; Joachim M. Buhmann (ISMB (Supplement of Bioinformatics), 2006)

Reducing Java internet project risks: a case study of public measurement of client component functionality in the user community. - Tomas Hruz; Matthias Hirsch-Hoffmann; Wilhelm Gruissem; Philip Zimmermann 001 (PPPJ, 2006)

A systematic comparison and evaluation of biclustering methods for gene expression data. - Amela Prelic; Stefan Bleuler; Philip Zimmermann 001; Anja Wille; Peter Bühlmann; Wilhelm Gruissem; Lars Hennig; Lothar Thiele; Eckart Zitzler (Bioinform., 2006)

Web-based analysis of the mouse transcriptome using Genevestigator. - Oliver Laule; Matthias Hirsch-Hoffmann; Tomas Hruz; Wilhelm Gruissem; Philip Zimmermann 001 (BMC Bioinform., 2006)

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra. - Franz F. Roos; Riko Jacob; Jonas Grossmann; Bernd Fischer 003; Joachim M. Buhmann; Wilhelm Gruissem; Sacha Baginsky; Peter Widmayer (Bioinform., 2007)

Genevestigator V3: A Reference Expression Database for the Meta-Analysis of Transcriptomes. - Tomas Hruz; Oliver Laule; Gábor Szabó 001; Frans Wessendorp; Stefan Bleuler; Lukas Oertle; Peter Widmayer; Wilhelm Gruissem; Philip Zimmermann 001 (Adv. Bioinformatics, 2008)

Annotating novel genes by integrating synthetic lethals and genomic information. - Daniel Schöner; Markus Kalisch; Christian Leisner; Lukas Meier; Marc Sohrmann; Mahamadou Faty; Yves Barral; Matthias Peter; Wilhelm Gruissem; Peter Bühlmann (BMC Syst. Biol., 2008)

Exact biclustering algorithm for the analysis of large gene expression data sets. - Oliver Voggenreiter; Stefan Bleuler; Wilhelm Gruissem (BMC Bioinform., 2012)

ExpressionData - A public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions. - Philip Zimmermann 001; Stefan Bleuler; Oliver Laule; Florian Martin 002; Nikolai V. Ivanov; Prisca Campanoni; Karen Oishi; Nicolas Lugon-Moulin; Markus Wyss; Tomas Hruz; Wilhelm Gruissem (BioData Min., 2014)