Dynamic distribution decomposition for single-cell snapshot time series identifies subpopulations and trajectories during iPSC reprogramming. - Jake P. Taylor-King; Asbjørn Nilsen Riseth; Will Macnair; Manfred Claassen (PLoS Comput. Biol., 2020)

psupertime: supervised pseudotime analysis for time-series single-cell RNA-seq data. - Will Macnair; Revant Gupta; Manfred Claassen (Bioinform., 2022)