Mining Maximal Frequent Subgraphs in KEGG Reaction Networks. - Willem P. A. Ligtenberg; Dragan Bosnacki; Peter A. J. Hilbers (DEXA Workshops, 2009)

Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors. - Dragan Bonaki; Maximilian R. Odenbrett; Anton Wijs; Willem P. A. Ligtenberg; Peter A. J. Hilbers (BMC Bioinform., 2012)

Reconn: a Cytoscape Plug-in for Exploring and Visualizing Reactome. - Willem P. A. Ligtenberg; Dragan Bosnacki; Peter A. J. Hilbers (J. Bioinform. Comput. Biol., 2013)