Least-squares fit of genomic data by sums of epistatic effects. - Philip J. Hanlon; William Andrew Lorenz; Dave Strenski (J. Parallel Distributed Comput., 2003)

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. - Fabrizio Ferrè; Yann Ponty; W. A. Lorenz; Peter Clote (Nucleic Acids Res., 2007)

Asymptotics of RNA Shapes. - W. A. Lorenz; Yann Ponty; Peter Clote (J. Comput. Biol., 2008)

RNA Structural Segmentation. - Iván Dotú; W. A. Lorenz; Pascal Van Hentenryck; Peter Clote (Pacific Symposium on Biocomputing, 2010)

Maximum expected accuracy structural neighbors of an RNA secondary structure. - Peter Clote; Feng Lou; William Andrew Lorenz (BMC Bioinform., 2012)

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences. - Yang Ding; William Andrew Lorenz; Jeffrey H. Chuang (BMC Bioinform., 2012)

Non-redundant random generation algorithms for weighted context-free languages - W. A. Lorenz; Yann Ponty (CoRR, 2012)

Non-redundant random generation algorithms for weighted context-free grammars. - William Andrew Lorenz; Yann Ponty (Theor. Comput. Sci., 2013)

Computing the Probability of RNA Hairpin and Multiloop Formation. - Yang Ding; William Andrew Lorenz; Iván Dotú; Evan Senter; Peter Clote (J. Comput. Biol., 2014)