Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. - William Arndt; Jijun Tang (RECOMB-CG, 2007)

Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. - Krister M. Swenson; William Arndt; Jijun Tang; Bernard M. E. Moret (APBC, 2008)

A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem. - Meng Zhang 006; William Arndt; Jijun Tang (WABI, 2008)

Improving Reversal Median Computation Using Commuting Reversals and Cycle Information. - William Arndt; Jijun Tang (J. Comput. Biol., 2008)

An Exact Solver for the DCJ Median Problem. - Meng Zhang 006; William Arndt; Jijun Tang (Pacific Symposium on Biocomputing, 2009)

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. - William Arndt; Thomas M. Asbury; W. Jim Zheng; Matt Mitman; Jijun Tang (BIBM Workshops, 2011)

Emulating Insertion and Deletion Events in Genome Rearrangement Analysis. - William Arndt; Jijun Tang (BIBM, 2011)

Isolating - a new resampling method for gene order data. - Jian Shi; William Arndt; Fei Hu; Jijun Tang (CIBCB, 2011)

HMMER web server: 2015 update. - Robert D. Finn; Jody Clements; William Arndt; Benjamin L. Miller; Travis J. Wheeler; Fabian Schreiber; Alex Bateman; Sean R. Eddy (Nucleic Acids Res., 2015)

Analyzing Performance of Selected NESAP Applications on the Cori HPC System. - Thorsten Kurth; William Arndt; Taylor Barnes; Brandon Cook 001; Jack Deslippe; Douglas Doerfler; Brian Friesen; Yun (Helen) He; Tuomas Koskela; Mathieu Lobet; Tareq M. Malas; Leonid Oliker; et al. (ISC Workshops, 2017)

Modifying HMMER3 to Run Efficiently on the Cori Supercomputer Using OpenMP Tasking. - William Arndt (IPDPS Workshops, 2018)

The LBNL Superfacility Project Report. - Deborah Bard; Cory Snavely; Lisa Gerhardt; Jason Lee 001; Becci Totzke; Katie Antypas; William Arndt; Johannes P. Blaschke; Suren Byna; Ravi Cheema; Shreyas Cholia; Mark R. Day; et al. (CoRR, 2022)

Workflows Community Summit 2022: A Roadmap Revolution. - Rafael Ferreira da Silva; Rosa M. Badia; Venkat Bala; Debbie Bard; Peer-Timo Bremer; Ian Buckley; Silvina Caíno-Lores; Kyle Chard; Carole A. Goble; Shantenu Jha; Daniel S. Katz; Daniel E. Laney; et al. (CoRR, 2023)

Enabling Low-Overhead HT-HPC Workflows at Extreme Scale using GNU Parallel. - Ketan Maheshwari; William Arndt; Ahmad Maroof Karimi; Junqi Yin; Frédéric Suter; Seth Johnson; Rafael Ferreira da Silva (SC Workshops, 2024)

Interactive and Urgent HPC: Challenges and Opportunities. - Albert Reuther; Nick Brown; William Arndt; Johannes P. Blaschke; Christian Boehme; Antony Chazapis; Bjoern Enders; Robert Henschel; Julian M. Kunkel; Maxime Martinasso (CoRR, 2024)

Optimizing Checkpoint-Restart Mechanisms for HPC with DMTCP in Containers at NERSC. - Madan Timalsina; Lisa Gerhardt; Nicholas Tyler; Johannes P. Blaschke; William Arndt (CoRR, 2024)