3D Fractal DNA Assembly from Coding, Geometry and Protection. - Alessandra Carbone; Chengde Mao; Pamela E. Constantinou; Baoquan Ding; Jens Kopatsch; William B. Sherman; Nadrian C. Seeman (Nat. Comput., 2004)

Structural DNA Nanotechnology: Molecular Construction and Computation. - Ruojie Sha; Xiaoping Zhang; Shiping Liao; Pamela E. Constantinou; Baoquan Ding; Tong Wang; Alejandra V. Garibotti; Hong Zhong; Lisa B. Israel; Xing Wang; Gang Wu; Banani Chakraborty; et al. (UC, 2005)

HolT Hunter: Software for identifying and characterizing low-strain DNA holliday triangles. - William B. Sherman (J. Comput. Chem., 2012)

Strategy for Naturelike Designer Transcription Factors with Reduced Toxicity. - Christian Bach; Prabir Patra; Jani M. Pallis; William B. Sherman; Hassan Bajwa (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)