Integrating Life Sciences Data - With a Little Garlic. - Laura M. Haas; Prasad Kodali; Julia E. Rice; Peter M. Schwarz; William C. Swope (BIBE, 2000)

Preface. - William C. Swope; James M. Coffin; Barry Robson (IBM J. Res. Dev., 2001)

Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

DiscoveryLink: A system for integrated access to life sciences data sources. - Laura M. Haas; Peter M. Schwarz; Prasad Kodali; Elon Kotlar; Julia E. Rice; William C. Swope (IBM Syst. J., 2001)

Deep computing for the life sciences. - William C. Swope (IBM Syst. J., 2001)

FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules. - Michael Pitman; Wolfgang Huber; Hans W. Horn; Andreas Krämer; Julia E. Rice; William C. Swope (J. Comput. Aided Mol. Des., 2001)

Blue Matter, an application framework for molecular simulation on Blue Gene. - Blake G. Fitch; Robert S. Germain; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Yuk Yin Sham; Frank Suits; William C. Swope; T. J. Christopher Ward; Yuriy Zhestkov; Ruhong Zhou (J. Parallel Distributed Comput., 2003)

Custom math functions for molecular dynamics. - Robert F. Enenkel; Blake G. Fitch; Robert S. Germain; Fred G. Gustavson; A. Martin; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Frank Suits; William C. Swope; T. J. Christopher Ward (IBM J. Res. Dev., 2005)

Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. - Frank Suits; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2005)

Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Yuriy Zhestkov; Michael Pitman; Frank Suits; Alan Grossfield; Jed W. Pitera; William C. Swope; Ruhong Zhou; et al. (International Conference on Computational Science (2), 2006)

Long-Time Protein Folding Dynamics from Short-Time Molecular Dynamics Simulations. - John D. Chodera; William C. Swope; Jed W. Pitera; Ken A. Dill (Multiscale Model. Simul., 2006)

Blue Matter: Scaling of N-body simulations to one atom per node. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2008)

Alchemical prediction of hydration free energies for SAMPL. - David L. Mobley; Shaui Liu; David S. Cerutti; William C. Swope; Julia E. Rice (J. Comput. Aided Mol. Des., 2012)

Collaborative Assessment of Molecular Geometries and Energies from the Open Force Field. - Lorenzo D'amore; David F. Hahn; David L. Dotson; Joshua T. Horton; Jamshed Anwar; Ian Craig; Thomas Fox; Alberto Gobbi; Sirish Kaushik Lakkaraju; Xavier Lucas; Katharina Meier; David L. Mobley; et al. (J. Chem. Inf. Model., 2022)