Towards Secure and Legal E-Tendering. - Martin P. Betts; Peter Black; Sharon Christensen; Ed Dawson; Rong Du; William D. Duncan; Ernest Foo; Juan Manuel González Nieto (J. Inf. Technol. Constr., 2006)

Access Control in Federated Databases: How Legal Issues Shape Security. - Mark Burdon; Juan Manuel González Nieto; Sharon Christensen; Ed Dawson; William D. Duncan; Bill Lane (EGOV, 2007)

Protecting the protectors: Legal liabilities from the use of Web 2.0 for Australian disaster response. - Rouhshi Low; Mark Burdon; Sharon Christensen; William D. Duncan; Paul Barnes; Ernest Foo (ISTAS, 2010)

Representing Intracoronal Tooth Restorations in the Ontology for Oral Health and Disease. - William D. Duncan; Titus Schleyer; Alan Ruttenberg (ICBO, 2013)

The neurological disease ontology. - Mark Jensen; Alexander P. Cox; Naveed Chaudhry; Marcus Ng; Donat Sule; William D. Duncan; Patrick Ray; Bianca Weinstock-Guttman; Barry Smith 001; Alan Ruttenberg; Kinga Szigeti; Alexander D. Diehl (J. Biomed. Semant., 2013)

Applications of OBI 'assay'. - Mark Jensen; Alexander P. Cox; Jonathan P. Bona; William D. Duncan; Patrick L. Ray; Alexander D. Diehl (ICBO, 2014)

Ontological Support for Living Plan Specification, Execution and Evaluation. - Erik Thomsen; Frederick Reed; William D. Duncan; Tatanya Malyuta; Barry Smith 001 (STIDS, 2014)

The ImmPort Antibody Ontology. - William D. Duncan; Travis Allen; Jonathan P. Bona; Olivia Helfer; Barry Smith 001; Alan Ruttenberg; Alexander D. Diehl (ICBO/BioCreative, 2016)

Representing vision and blindness. - Patrick L. Ray; Alexander P. Cox; Mark Jensen; Travis Allen; William D. Duncan; Alexander D. Diehl (J. Biomed. Semant., 2016)

Towards an Ontology for Representing Malignant Neoplasms. - William D. Duncan; Carmelo Gaudioso; Alexander D. Diehl (ICBO, 2017)

Ontological distinctions between hardware and software. - William D. Duncan (Appl. Ontology, 2017)

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Jonathan P. Bona; Chuming Chen; Sheng-Chih Chen; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; William D. Duncan; et al. (Nucleic Acids Res., 2017)

Using the Oral Health and Disease Ontology to Study Dental Outcomes in National Dental PBRN Practices. - William D. Duncan; Thankam Thyvalikakath; Zasim Azhar Siddiqui; Michelle LaPradd; Chen Wen; Jim Zheng; Anna Roberts; Daniel Hood; Aparna Manimangala; Donald Rindal; Mark Jurkovich; Tracy Shea; et al. (ICBO, 2018)

Enhancing Semantic Analysis of Pathology Reports. - William D. Duncan; Philip Whalen; Aditya Muralidharan; Jonathan Kiddy (ICBO, 2018)

Coordinated Evolution of Ontologies of Informed Consent. - J. Neil Otte; Cooper Stansbury; Jonathan Vajda; Frank J. Manion; Elizabeth Umberfield; Yongqun He; Marcelline R. Harris; Jihad S. Obeid; Mathias Brochhausen; William D. Duncan; Cui Tao (ICBO, 2018)

Early steps of an Ontology for Magnetic Resonance Imaging: MRIO. - Lucas M. Serra; Michael G. Dwyer; William D. Duncan; Alexander D. Diehl (ICBO, 2019)

Tripartite Term Enrichment Analysis of Multiple Sclerosis Patient Reported Outcomes. - Mackenzie T. Smith; Lauren M. Wishnie; William D. Duncan; Mark Jensen; Alexander D. Diehl (ICBO, 2019)

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. - Yongqun He; William D. Duncan; Daniel J. Cooper; Jens Hansen; Ravi Iyengar; Edison Ong; Kendal Walker; Omar Tibi; Sam Smith; Lucas M. Serra; Jie Zheng 001; Sirarat Sarntivijai; et al. (BMC Bioinform., 2019)

An ontology for representing hematologic malignancies: the cancer cell ontology. - Lucas M. Serra; William D. Duncan; Alexander D. Diehl (BMC Bioinform., 2019)

CIDO: The Community-Based Coronavirus Infectious Disease Ontology. - Yongqun He; Hong Yu 014; Edison Ong; Yang Wang; Yingtong Liu; Anthony Huffman; Hsin-Hui Huang; John Beverley; Asiyah Yu Lin; William D. Duncan; Sivaram Arabandi; Jiangan Xie; et al. (ICBO/ODLS, 2020)

Leveraging Electronic Dental Record Data for Clinical Research in the National Dental PBRN Practices. - Thankam Paul Thyvalikakath; William D. Duncan; Zasim Azhar Siddiqui; Michelle LaPradd; George Eckert; Titus Schleyer; Donald Rindal; Mark Jurkovich; Tracy Shea; Gregg H. Gilbert (Appl. Clin. Inform., 2020)

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology. - William D. Duncan; Thankam Thyvalikakath; Melissa A. Haendel; Carlo Torniai; Pedro Hernández; Mei Song; Amit Acharya; Daniel J. Caplan; Titus Schleyer; Alan Ruttenberg (J. Biomed. Semant., 2020)

A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. - Lauren E. Chan; Nicole A. Vasilevsky; Anne E. Thessen; Nicolas Matentzoglu; William D. Duncan; Christopher J. Mungall; Melissa A. Haendel (ICBO, 2021)

Leveraging Ontologies within the National Microbiome Data Collaborative. - William D. Duncan; Faiza Ahmed; Fnu Anubhav; Jeffrey Baumes; Jonathan Beezley; Mark Borkum; Lisa M. Bramer; Shane Canon; Patrick S. G. Chain; Danielle Christianson; Yuri Corilo; Karen Davenport; et al. (ICBO, 2021)

KG-Microbe: A Reference Knowledge-Graph and Platform for Harmonized Microbial Information. - Marcin P. Joachimiak; Harshad Hegde; William D. Duncan; Justin T. Reese; Luca Cappelletti; Anne E. Thessen; Christopher J. Mungall (ICBO, 2021)

A Community Effort for COVID-19 Ontology Harmonization. - Asiyah Yu Lin; Yuki Yamagata; William D. Duncan; Leigh C. Carmody; Tatsuya Kushida; Hiroshi Masuya; John Beverley; Biswanath Dutta; Michael DeBellis; Zoë May Pendlington; Paola Roncaglia; Yongqun He (ICBO, 2021)

The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics. - Sierra A. T. Moxon; Harold Solbrig; Deepak R. Unni; Dazhi Jiao; Richard M. Bruskiewich; James P. Balhoff; Gaurav Vaidya; William D. Duncan; Harshad Hegde; Mark A. Miller; Matthew H. Brush; Nomi L. Harris; et al. (ICBO, 2021)

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. - Rebecca C. Jackson; Nicolas Matentzoglu; James A. Overton; Randi Vita; James P. Balhoff; Pier Luigi Buttigieg; Seth Carbon; Mélanie Courtot; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Nomi L. Harris; et al. (Database J. Biol. Databases Curation, 2021)

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. - Bin Hu 025; Shane Canon; Emiley A. Eloe-Fadrosh; Fnu Anubhav; Michal Babinski; Yuri Corilo; Karen Davenport; William D. Duncan; Kjiersten Fagnan; Mark Flynn; Brian Foster; David Hays; et al. (Frontiers Bioinform., 2021)

Development of an Image Data Set Class: Its Role in Biomedical Imaging and Neuroimaging Research. - Alexander Bartnik; Lucas M. Serra; Mackenzie T. Smith; William D. Duncan; Alan Ruttenberg; Michael G. Dwyer; Alexander D. Diehl (ICBO, 2022)

COB: A Core Ontology for Biology and Biomedicine. - James A. Overton; Rebecca C. Jackson; Nicolas Matentzoglu; William D. Duncan; Randi Vita; Nomi L. Harris; Christopher J. Mungall; Bjoern Peters (ICBO, 2022)

A Simple Standard for Sharing Ontological Mappings (SSSOM). - Nicolas Matentzoglu; James P. Balhoff; Susan M. Bello; Chris Bizon; Matthew H. Brush; Tiffany J. Callahan; Christopher G. Chute; William D. Duncan; Chris T. A. Evelo; Davera Gabriel; John B. Graybeal; Alasdair J. G. Gray; et al. (Database J. Biol. Databases Curation, 2022)

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (Database J. Biol. Databases Curation, 2022)

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. - Yongqun He; Hong Yu 014; Anthony Huffman; Asiyah Yu Lin; Darren A. Natale; John Beverley; Ling Zheng; Yehoshua Perl; Zhigang Wang; Yingtong Liu; Edison Ong; Yang Wang; et al. (J. Biomed. Semant., 2022)

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (CoRR, 2022)

The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. - John Beverley; Sam Smith; Matthew Diller; William D. Duncan; Jie Zheng 001; John W. Judkins; William R. Hogan; Robin McGill; Damion M. Dooley; Yongqun He (JOWO, 2023)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Sue Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (CoRR, 2023)

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. - Lauren E. Chan; Anne E. Thessen; William D. Duncan; Nicolas Matentzoglu; Charles Schmitt; Cynthia J. Grondin; Nicole A. Vasilevsky; Julie A. McMurry; Peter N. Robinson; Christopher J. Mungall; Melissa A. Haendel (J. Biomed. Semant., 2023)

Credentials in the Occupation Ontology. - John Beverley; Robin McGill; Sam Smith; Jie Zheng 001; Giacomo De Colle; Finn Wilson; Matthew Diller; William D. Duncan; William R. Hogan; Yongqun He (ICBO, 2024)

An Ontological Representation of Oral Dysbiosis. - Gopikrishnan Mannamparambil Chandrasekharan; Alexander D. Diehl; Nivedita Dutta; William D. Duncan (ICBO, 2024)

CellCards: Development of a Dynamic Ontology-Derived ETL Pipeline for Automatic Cell Information Extraction and Analysis. - Mary Czelusniak; Emily Tran; Fatima Oudeif; Jie Zheng 001; William D. Duncan; Alexander D. Diehl; Yongqun He (ICBO, 2024)

Initial Steps in Developing an Ontology of Dental Care-Related Fear, Anxiety, and Phobia. - William D. Duncan; Astha Singhal; Olga S. Enz; Alexander D. Diehl; Brenda Heaton; Daniel W. McNeil (ICBO, 2024)

Representing Bionic-vision Devices in the Neural Electronic Interface Ontology. - Jisoo Seo; Alexander D. Diehl; Daniel L. Rathbun; Gopikrishnan Mannamparambil Chandrasekharan; Callie L. McGrath; William D. Duncan (ICBO, 2024)

Building an Ontology of Pain. - Finn D. Wilson; Gopikrishnan Mannamparambil Chandrasekharan; Matthew Diller; Jisoo Seo; Alexander D. Diehl; William D. Duncan (ICBO, 2024)

MRIO: the Magnetic Resonance Imaging Acquisition and Analysis Ontology. - Alexander Bartnik; Lucas M. Serra; Mackenzie T. Smith; William D. Duncan; Lauren Wishnie; Alan Ruttenberg; Michael G. Dwyer; Alexander D. Diehl (Neuroinformatics, 2024)

Concretizing plan specifications as realizables within the OBO foundry. - William D. Duncan; Matthew Diller; Damion M. Dooley; William R. Hogan; John Beverley (J. Biomed. Semant., 2024)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Susan M. Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (J. Biomed. Semant., 2024)