pez: phylogenetics for the environmental sciences. - William D. Pearse; Marc W. Cadotte; Jeannine Cavender-Bares; Anthony R. Ives; Caroline M. Tucker; Steve C. Walker; Matthew R. Helmus (Bioinform., 2015)

Suppdata: Downloading Supplementary Data from Published Manuscripts. - Will Pearse; Scott Chamberlain (J. Open Source Softw., 2018)

datacarpentry/R-ecology-lesson: Data Carpentry: Data Analysis and Visualization in R for Ecologists, June 2019. - François Michonneau; Tracy K. Teal; Auriel M. V. Fournier; Brian Seok; Adam Obeng; Aleksandra Natalia Pawlik; Ana Costa Conrado; Kara H. Woo; Philip Lijnzaad; Ted Hart; Ethan P. White; Ben Marwick; et al. (Zenodo, 2019)

SymbiotaR2: An R Package for Accessing Symbiota2 Data. - Austin Koontz; Benjamin Brandt; Curtis E. Dyreson; William D. Pearse (J. Open Source Softw., 2020)