CMAP: contig mapping and analysis package, a relational database for chromosome reconstruction. - A. Jamie Cuticchia; Jonathan P. Arnold; H. Brody; William E. Timberlake (Comput. Appl. Biosci., 1992)

PCAP: probe choice and analysis package - a set of programs to aid in choosing synthetic oligomers for contig mapping. - A. Jamie Cuticchia; Jonathan P. Arnold; William E. Timberlake (Comput. Appl. Biosci., 1993)

ODS: ordering DNA sequences - a physical mapping algorithm based on simulated annealing. - A. Jamie Cuticchia; Jonathan P. Arnold; William E. Timberlake (Comput. Appl. Biosci., 1993)

ODS_BOOTSTRAP: assessing the statistical reliability of physical maps by bootstrap resampling. - Yuhong Wang; Rolf A. Prade; James Griffith; William E. Timberlake; Jonathan P. Arnold (Comput. Appl. Biosci., 1994)