RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. - William G. Fairbrother; Gene W. Yeo; Rufang Yeh; Paul Goldstein; Matthew Mawson; Phillip A. Sharp; Christopher B. Burge (Nucleic Acids Res., 2004)

Spliceman - a computational web server that predicts sequence variations in pre-mRNA splicing. - Kian Huat Lim; William G. Fairbrother (Bioinform., 2012)

Spliceman2: a computational web server that predicts defects in pre-mRNA splicing. - Kamil Jan Cygan; Clayton Hendrick Sanford; William G. Fairbrother (Bioinform., 2017)

ShapeShifter: a novel approach for identifying and quantifying stable lariat intronic species in RNAseq data. - Allison J. Taggart; William G. Fairbrother (Quant. Biol., 2018)