Medical Image Processing, Analysis & Visualization in Clinical Research. - Matthew J. McAuliffe; Francois M. Lalonde; Delia McGarry; William Gandler; Karl Csaky; Benes L. Trus (CBMS, 2001)

Free software tools for atlas-based volumetric neuroimage analysis. - Pierre-Louis Bazin; Dzung L. Pham; William Gandler; Matthew J. McAuliffe (Image Processing, 2005)

Segmentation and surface reconstruction model of prostate MRI to improve prostate cancer diagnosis. - Ruida Cheng; Marcelino Bernardo; Justin Senseney; Alexandra Bokinsky; William Gandler; Baris Turkbey; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe (ISBI, 2013)

2D registration guided models for semi-automatic MRI prostate segmentation. - Ruida Cheng; Baris Turkbey; Justin Senseney; Marcelino Bernardo; Alexandra Bokinsky; William Gandler; Evan S. McCreedy; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe (Image Processing, 2013)

GPU based multi-histogram volume navigation for virtual bronchoscopy. - Ruida Cheng; Sheng Xu 001; Alexandra Bokinsky; Evan S. McCreedy; William Gandler; Bradford J. Wood; Matthew J. McAuliffe (EMBC, 2014)

Atlas based AAM and SVM model for fully automatic MRI prostate segmentation. - Ruida Cheng; Baris Turkbey; William Gandler; Harsh K. Agarwal; Vijay P. Shah; Alexandra Bokinsky; Evan S. McCreedy; Shijun Wang; Sandeep Sankineni; Marcelino Bernardo; Thomas Pohida; Peter L. Choyke; et al. (EMBC, 2014)

Patellar segmentation from 3D magnetic resonance images using guided recursive ray-tracing for edge pattern detection. - Ruida Cheng; Jennifer N. Jackson; Evan S. McCreedy; William Gandler; J. J. F. A. Eijkenboom; M. van Middelkoop; Matthew J. McAuliffe; Frances T. Sheehan (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Active appearance model and deep learning for more accurate prostate segmentation on MRI. - Ruida Cheng; Holger R. Roth; Le Lu 001; Shijun Wang; Baris Turkbey; William Gandler; Evan S. McCreedy; Harsh K. Agarwal; Peter L. Choyke; Ronald M. Summers; Matthew J. McAuliffe (Image Processing, 2016)

Deep learning with orthogonal volumetric HED segmentation and 3D surface reconstruction model of prostate MRI. - Ruida Cheng; Nathan Lay; Francesca Mertan; Baris Turkbey; Holger R. Roth; Le Lu 001; William Gandler; Evan S. McCreedy; Thomas Pohida; Peter L. Choyke; Matthew J. McAuliffe; Ronald M. Summers (ISBI, 2017)

Automatic MR prostate segmentation by deep learning with holistically-nested networks. - Ruida Cheng; Holger R. Roth; Nathan Lay; Le Lu 001; Baris Turkbey; William Gandler; Evan S. McCreedy; Peter L. Choyke; Ronald M. Summers; Matthew J. McAuliffe (Image Processing, 2017)