Identification of key concepts in biomedical literature using a modified Markov heuristic. - William H. Majoros; G. M. Subramanian; Mark Yandell (Bioinform., 2003)

GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders. - William H. Majoros; Mihaela Pertea; Corina Antonescu; Steven Salzberg (Nucleic Acids Res., 2003)

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. - William H. Majoros; Mihaela Pertea; Steven Salzberg (Bioinform., 2004)

An empirical analysis of training protocols for probabilistic gene finders. - William H. Majoros; Steven Salzberg (BMC Bioinform., 2004)

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. - William H. Majoros; Mihaela Pertea; Sihaela Salzberg (Bioinform., 2005)

Efficient decoding algorithms for generalized hidden Markov model gene finders. - William H. Majoros; Mihaela Pertea; Arthur L. Delcher; Steven Salzberg (BMC Bioinform., 2005)

Advancing the State of the Art in Computational Gene Prediction. - William H. Majoros; Uwe Ohler (KDECB, 2006)

Complexity reduction in context-dependent DNA substitution models. - William H. Majoros; Uwe Ohler (Bioinform., 2009)

Modeling the Evolution of Regulatory Elements by Simultaneous Detection and Alignment with Phylogenetic Pair HMMs. - William H. Majoros; Uwe Ohler (PLoS Comput. Biol., 2010)

Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields. - Iulian Pruteanu-Malinici; William H. Majoros; Uwe Ohler (Bioinform., 2013)

Improved transcript isoform discovery using ORF graphs. - William H. Majoros; Niel Lebeck; Uwe Ohler; Song Li (Bioinform., 2014)

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. - William H. Majoros; Michael Campbell; Carson Holt; Erin K. DeNardo; Doreen Ware; Andrew S. Allen; Mark Yandell; Timothy E. Reddy (Bioinform., 2017)

Statistical Modeling of Genetic and Epigenetic Factors in Gene Structures and Transcriptional Enhancers. - William H. Majoros (2017)

Predicting gene structure changes resulting from genetic variants via exon definition features. - William H. Majoros; Carson Holt; Michael Campbell; Doreen Ware; Mark Yandell; Timothy E. Reddy (Bioinform., 2018)

Bayesian estimation of genetic regulatory effects in high-throughput reporter assays. - William H. Majoros; Young-Sook Kim; Alejandro Barrera; Fan Li; Xingyan Wang; Sarah J. Cunningham; Graham D. Johnson; Cong Guo; William L. Lowe; Denise M. Scholtens; M. Geoffrey Hayes; Timothy E. Reddy; et al. (Bioinform., 2020)