PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments. - Paul Breimyer; Guruprasad Kora; William Hendrix; Neil Shah; Nagiza F. Samatova (IADIS AC (2), 2009)

pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R. - Paul Breimyer; William Hendrix; Guruprasad Kora; Nagiza F. Samatova (IKE, 2009)

On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs. - William Hendrix; Matthew C. Schmidt; Paul Breimyer; Nagiza F. Samatova (KDD Workshop on Knowledge Discovery from Uncertain Data, 2009)

Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. - William Hendrix; Andrea M. Rocha; Mark T. Elmore; Joe Trien; Nagiza F. Samatova (BIOCOMP, 2010)

The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction. - Wenbin Chen 003; Andrea M. Rocha; William Hendrix; Matthew C. Schmidt; Nagiza F. Samatova (ICDM Workshops, 2010)

Detecting and Tracking Community Dynamics in Evolutionary Networks. - Zhengzhang Chen; Kevin A. Wilson; Ye Jin; William Hendrix; Nagiza F. Samatova (ICDM Workshops, 2010)

Theoretical underpinnings for maximal clique enumeration on perturbed graphs. - William Hendrix; Matthew C. Schmidt; Paul Breimyer; Nagiza F. Samatova (Theor. Comput. Sci., 2010)

Community Dynamics and Analysis of Decadal Trends in Climate Data. - William Hendrix; Isaac K. Tetteh; Ankit Agrawal 001; Fredrick H. M. Semazzi; Wei-keng Liao; Alok N. Choudhary (ICDM Workshops, 2011)

Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems. - Tatdow Pansombut; William Hendrix; Zekai Jacob Gao; Brent E. Harrison; Nagiza F. Samatova (IJCAI, 2011)

Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction. - Huseyin Sencan; Zhengzhang Chen; William Hendrix; Tatdow Pansombut; Fredrick H. M. Semazzi; Alok N. Choudhary; Vipin Kumar 001; Anatoli V. Melechko; Nagiza F. Samatova (IJCAI, 2011)

Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data. - William Hendrix; Tatiana V. Karpinets; Byung-Hoon Park; Eric R. Schendel; Alok N. Choudhary; Nagiza F. Samatova (IPDPS Workshops, 2011)

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules. - William Hendrix; Andrea M. Rocha; Kanchana Padmanabhan; Alok N. Choudhary; Kathleen Scott; James R. Mihelcic; Nagiza F. Samatova (BMC Syst. Biol., 2011)

Parallel hierarchical clustering on shared memory platforms. - William Hendrix; Md. Mostofa Ali Patwary; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (HiPC, 2012)

High Performance Big Data Clustering. - Ankit Agrawal 001; Md. Mostofa Ali Patwary; William Hendrix; Wei-keng Liao; Alok N. Choudhary (High Performance Computing Workshop (1), 2012)

Social media evolution of the Egyptian revolution. - Alok N. Choudhary; William Hendrix; Kathy Lee; Diana Palsetia; Wei-keng Liao (Commun. ACM, 2012)

Community-based anomaly detection in evolutionary networks. - Zhengzhang Chen; William Hendrix; Nagiza F. Samatova (J. Intell. Inf. Syst., 2012)

Solving combinatorial optimization problems using relaxed linear programming: a high performance computing perspective. - Chen Jin; Qiang Fu 021; Huahua Wang; Ankit Agrawal 001; William Hendrix; Wei-keng Liao; Md. Mostofa Ali Patwary; Arindam Banerjee 001; Alok N. Choudhary (BigMine, 2013)

A scalable algorithm for single-linkage hierarchical clustering on distributed-memory architectures. - William Hendrix; Diana Palsetia; Md. Mostofa Ali Patwary; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (LDAV, 2013)

Discovery of extreme events-related communities in contrasting groups of physical system networks. - Zhengzhang Chen; William Hendrix; Hang Guan; Isaac K. Tetteh; Alok N. Choudhary; Fredrick H. M. Semazzi; Nagiza F. Samatova (Data Min. Knowl. Discov., 2013)

Clique guided community detection. - Diana Palsetia; Md. Mostofa Ali Patwary; William Hendrix; Ankit Agrawal 001; Alok N. Choudhary (IEEE BigData, 2014)

NUMARCK: Machine Learning Algorithm for Resiliency and Checkpointing. - Zhengzhang Chen; Seung Woo Son 001; William Hendrix; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (SC, 2014)

Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations. - Steve Harenberg; Ramona G. Seay; Stephen Ranshous; Kanchana Padmanabhan; Jitendra K. Harlalka; Eric R. Schendel; Michael P. O'Brien; Rada Chirkova; William Hendrix; Alok N. Choudhary; Vipin Kumar 001; Murali Doraiswamy; et al. (SDM, 2014)

Data Compression for the Exascale Computing Era - Survey. - Seung Woo Son 001; Zhengzhang Chen; William Hendrix; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (Supercomput. Front. Innov., 2014)

A Scalable Hierarchical Clustering Algorithm Using Spark. - Chen Jin; Ruoqian Liu; Zhengzhang Chen; William Hendrix; Ankit Agrawal 001; Alok N. Choudhary (BigDataService, 2015)

Running MAP Inference on Million Node Graphical Models: A High Performance Computing Perspective. - Chen Jin; Qiang Fu 021; Huahua Wang; William Hendrix; Zhengzhang Chen; Ankit Agrawal 001; Arindam Banerjee 001; Alok N. Choudhary (CCGRID, 2015)

Incremental, distributed single-linkage hierarchical clustering algorithm using mapreduce. - Chen Jin; Zhengzhang Chen; William Hendrix; Ankit Agrawal 001; Alok N. Choudhary (SpringSim (HPS), 2015)

Parallel Implementation of Lossy Data Compression for Temporal Data Sets. - Zheng Yuan; William Hendrix; Seung Woo Son 001; Christoph Federrath; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (HiPC, 2016)

AGORAS: A Fast Algorithm for Estimating Medoids in Large Datasets. - Esteban Rangel; Wei-keng Liao; Ankit Agrawal 001; Alok N. Choudhary; William Hendrix (ICCS, 2016)

Parallel Community Detection Algorithm Using a Data Partitioning Strategy with Pairwise Subdomain Duplication. - Diana Palsetia; William Hendrix; Sunwoo Lee 001; Ankit Agrawal 001; Wei-keng Liao; Alok N. Choudhary (ISC, 2016)

On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems. - Wenbin Chen 003; Nagiza F. Samatova; Matthias F. Stallmann; William Hendrix; Weiqin Ying (Theor. Comput. Sci., 2016)

The Application of the Weighted k-Partite Graph Problem to the Multiple Alignment for Metabolic Pathways. - Wenbin Chen 003; William Hendrix; Nagiza F. Samatova (J. Comput. Biol., 2017)

Predicting Success for Computer Science Students in CS2 using Grades in Previous Courses. - Sulav Malla; Jing Wang 011; William Hendrix; Ken Christensen 001 (FIE, 2019)