SPLASH: A Reconfigurable Linear Logic Array. - Maya B. Gokhale; William Holmes; Andrew Kopser; Dick Kunze; Daniel P. Lopresti; Sara P. Lucas; Ronald G. Minnich; Peter Olsen (ICPP (1), 1990)

Building and Using a Highly Parallel Programmable Logic Array. - Maya B. Gokhale; William Holmes; Andrew Kopser; Sara P. Lucas; Ronald G. Minnich; Douglas Sweely; Daniel P. Lopresti (Computer, 1991)

Processing in Memory: The Terasys Massively Parallel PIM Array. - Maya B. Gokhale; William Holmes; Ken Iobst (Computer, 1995)

Active dendrites regulate spatio-temporal synaptic integration in hippocampal dentate granule cells. - Ildikó Aradi; William Holmes (Neurocomputing, 1999)

Role of Multiple Calcium and Calcium-Dependent Conductances in Regulation of Hippocampal Dentate Granule Cell Excitability. - Ildikó Aradi; William Holmes (J. Comput. Neurosci., 1999)

Comparison of CaMKinase II activation in a dendritic spine computed with deterministic and stochastic models of the NMDA synaptic conductance. - Yin Li; William Holmes (Neurocomputing, 2000)

Models of Calmodulin Trapping and CaM Kinase II Activation in a Dendritic Spine. - William Holmes (J. Comput. Neurosci., 2000)

Computational Neuroscience: Trends in Research 2007. - William Holmes (Neurocomputing, 2007)

Applying Action Masking and Curriculum Learning Techniques to Improve Data Efficiency and Overall Performance in Operational Technology Cyber Security using Reinforcement Learning. - Alec Wilson; William Holmes; Ryan Menzies; Kez Smithson Whitehead (CAMLIS, 2024)

From Obstacle Problems to Neural Insights: Feed Forward Neural Network Modeling of Ice Thickness. - Kapil Chawla; William Holmes; Roger Temam (CoRR, 2024)

A physics informed neural network approach to simulating ice dynamics governed by the shallow ice approximation. - Kapil Chawla; William Holmes (CoRR, 2025)