Non-adaptive Group Testing in the Presence of Errors. - Emanuel Knill; William J. Bruno; David C. Torney (Discret. Appl. Math., 1998)

Optimizing Nonadaptive Group Tests for Objects with Heterogeneous Priors. - David C. Torney; Fengzhu Sun; William J. Bruno (SIAM J. Appl. Math., 1998)

Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data. - Ian Holmes; William J. Bruno (ISMB, 2000)

Evolutionary HMMs: a Bayesian approach to multiple alignment. - Ian Holmes; William J. Bruno (Bioinform., 2001)

Weighted Pseudo-distances for Categorization in Semantic Hierarchies. - Cliff A. Joslyn; William J. Bruno (ICCS, 2005)

Transformations that Preserve Detailed Balance in Markov Models. - William J. Bruno; John E. Pearson (J. Comput. Biol., 2006)