A guide to building image-centric databases. - William J. Bug; Jonathan Nissanov (Neuroinformatics, 2003)

The impact of the NIH public access policy on literature informatics - What role can the neuroinformaticists play? - William J. Bug (Neuroinformatics, 2005)

An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. - Lisa Fong; Stephen D. Larson; Amarnath Gupta; Christopher Condit; William J. Bug; Li Chen 027; Ruth West; Stephan Lamont; Masako Terada; Maryann E. Martone (OWLED, 2007)

NeuroTerrain - a client-server system for browsing 3D biomedical image data sets. - Carl Gustafson; William J. Bug; Jonathan Nissanov (BMC Bioinform., 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

A formal ontology of subcellular neuroanatomy. - Stephen D. Larson; Lisa Fong; Amarnath Gupta; Christopher Condit; William J. Bug; Maryann E. Martone (Frontiers Neuroinformatics, 2007)

The OWL of Biomedical Investigations. - Mélanie Courtot; William J. Bug; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (OWLED, 2008)

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. - William J. Bug; Giorgio A. Ascoli; Jeffrey S. Grethe; Amarnath Gupta; Christine Fennema-Notestine; Angela R. Laird; Stephen D. Larson; Daniel L. Rubin; Gordon M. Shepherd; Jessica A. Turner; Maryann E. Martone (Neuroinformatics, 2008)

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. - Daniel Gardner; Huda Akil; Giorgio A. Ascoli; Douglas M. Bowden; William J. Bug; Duncan E. Donohue; David H. Goldberg; Bernice Grafstein; Jeffrey S. Grethe; Amarnath Gupta; Maryam Halavi; David N. Kennedy; et al. (Neuroinformatics, 2008)

Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). - Amarnath Gupta; William J. Bug; Luis N. Marenco; Xufei Qian; Christopher Condit; Arun Rangarajan; Hans-Michael Müller; Perry L. Miller; Brian Sanders; Jeffrey S. Grethe; Vadim Astakhov; Gordon M. Shepherd; et al. (Neuroinformatics, 2008)