Combing the hairball with BioFabric: a new approach for visualization of large networks. - William J. R. Longabaugh (BMC Bioinform., 2012)

The Cytoscape app article collection. - Alexander R. Pico; Gary D. Bader; Barry Demchak; Oriol Guitart Pla; Timothy Hull; William J. R. Longabaugh; Christian Tannus Lopes; Samad Lotia; Piet Molenaar; Jason Montojo; John H. Morris; Keiichiro Ono; et al. (F1000Research, 2014)

BioTapestry now provides a web application and improved drawing and layout tools. - Suzanne M. Paquette; Kalle Leinonen; William J. R. Longabaugh (F1000Research, 2016)

The Cytoscape Automation app article collection. - Barry Demchak; David Otasek; Alexander R. Pico; Gary D. Bader; Keiichiro Ono; Brett Settle; Eric Sage; John H. Morris; William J. R. Longabaugh; Christian Tannus Lopes; Michael Kucera; Adam Treister; et al. (F1000Research, 2018)

The NCI Imaging Data Commons as a platform for reproducible research in computational pathology. - Daniela P. Schacherer; Markus D. Herrmann; David A. Clunie; Henning Höfener; William Clifford; William J. R. Longabaugh; Steven D. Pieper; Ron Kikinis; Andrey Fedorov; André Homeyer (Comput. Methods Programs Biomed., 2023)