ArchTEx: accurate extraction and visualization of next-generation sequence data. - William K. M. Lai; Jonathan E. Bard; Michael J. Buck (Bioinform., 2012)

An integrative approach to understanding the combinatorial histone code at functional elements. - William K. M. Lai; Michael J. Buck (Bioinform., 2013)

Characterizing protein-DNA binding event subtypes in ChIP-exo data. - Naomi Yamada; William K. M. Lai; Nina Farrell; B. Franklin Pugh; Shaun Mahony (Bioinform., 2019)

PEGR: a management platform for ChIP-based next generation sequencing pipelines. - Danying Shao; Gretta Kellogg; Shaun Mahony; William K. M. Lai; B. Franklin Pugh (PEARC, 2020)

ScriptManager: an interactive platform for reducing barriers to genomics analysis. - Olivia W. Lang; B. Franklin Pugh; William K. M. Lai (PEARC, 2022)

STENCIL: A web templating engine for visualizing and sharing life science datasets. - Qi Sun; Ali Nematbakhsh; Prashant Kumar Kuntala; Gretta Kellogg; B. Franklin Pugh; William K. M. Lai (PLoS Comput. Biol., 2022)

Adversarial Robustness and Explainability of Machine Learning Models. - Jamil Gafur; Steve Goddard; William K. M. Lai (PEARC, 2024)