A Geographic Exploration of Colon Polyps. - Anna Roberts; Arun Muthalagu; Jennifer A. Pacheco; William K. Thompson; Andrew Gawron; Abel N. Kho (AMIA, 2012)

An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. - William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Peggy L. Peissig; Joshua C. Denny; Abel N. Kho; Aaron W. Miller; Jyotishman Pathak (AMIA, 2012)

Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms. - William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Anna Roberts; Arun Muthalagu; Abel N. Kho (AMIA, 2012)

Portability of an algorithm to identify rheumatoid arthritis in electronic health records. - Robert J. Carroll; William K. Thompson; Anne E. Eyler; Arthur M. Mandelin; Tianxi Cai; Raquel M. Zink; Jennifer A. Pacheco; Chad S. Boomershine; Thomas A. Lasko; Hua Xu 001; Elizabeth W. Karlson; Raúl G. Pérez; et al. (J. Am. Medical Informatics Assoc., 2012)

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. - Abel N. Kho; M. Geoffrey Hayes; Laura Rasmussen-Torvik; Jennifer A. Pacheco; William K. Thompson; Loren L. Armstrong; Joshua C. Denny; Peggy L. Peissig; Aaron W. Miller; Wei-Qi Wei; Suzette J. Bielinski; Christopher G. Chute; et al. (J. Am. Medical Informatics Assoc., 2012)

Automating Extraction and Calculation of Daily Dose and Duration for Medications in EHRs. - Jennifer A. Pacheco; William K. Thompson; Kathryn L. Jackson; Abel N. Kho (AMIA, 2014)

Evaluation of Existing Phenotype Authoring Tools for Clinical Research. - Luke V. Rasmussen; Jie Xu 011; Ruijue Liu; Qian Zhu 003; Jennifer A. Pacheco; Jyotishman Pathak; William K. Thompson; Joshua C. Denny; Huan Mo; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague (AMIA, 2014)

Qualitative evaluation of three phenotype information models to find methotrexate liver injury. - Qian Zhu 003; Huan Mo; Luke V. Rasmussen; Andrew R. Post; Jennifer A. Pacheco; Jie Xu 011; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague; William K. Thompson; Joshua C. Denny; Jyotishman Pathak (AMIA, 2014)

Design patterns for the development of electronic health record-driven phenotype extraction algorithms. - Luke V. Rasmussen; William K. Thompson; Jennifer A. Pacheco; Abel N. Kho; David Carrell; Jyotishman Pathak; Peggy L. Peissig; Gerard Tromp; Joshua C. Denny; Justin B. Starren (J. Biomed. Informatics, 2014)

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Jennifer A. Pacheco; Enid N. H. Montague; Jie Xu 011; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; et al. (AMIA, 2015)

A Genome- and Phenome- Wide Study of Diverticulosis. - Yoonjung Y. Joo; Jennifer A. Pacheco; Loren L. Armstrong; William K. Thompson; Robert J. Carroll; Joshua C. Denny; Peggy L. Peissig; James G. Linneman; Jyotishman Pathak; Girish N. Nadkarni; Laura Rasmussen-Torvik; M. Geoffrey Hayes; et al. (AMIA, 2015)

Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. - Huan Mo; Jennifer A. Pacheco; Richard C. Kiefer; Luke V. Rasmussen; Jyotishman Pathak; Joshua C. Denny; William K. Thompson (AMIA, 2015)

Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. - Enid N. H. Montague; Jie Xu 011; Luke V. Rasmussen; Joshua C. Denny; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Peter Speltz; William K. Thompson; Jyotishman Pathak (AMIA, 2015)

PhEMA: Phenotype Modeling, Sharing and Execution Architecture. - Jyotishman Pathak; Joshua C. Denny; William K. Thompson; Luke V. Rasmussen (AMIA, 2015)

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; Jyotishman Pathak (MedInfo, 2015)

Desiderata for computable representations of electronic health records-driven phenotype algorithms. - Huan Mo; William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Guoqian Jiang; Richard C. Kiefer; Qian Zhu 003; Jie Xu 011; Enid N. H. Montague; David S. Carrell; Todd Lingren; Frank D. Mentch; et al. (J. Am. Medical Informatics Assoc., 2015)

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. - Jie Xu 011; Luke V. Rasmussen; Pamela L. Shaw; Guoqian Jiang; Richard C. Kiefer; Huan Mo; Jennifer A. Pacheco; Peter Speltz; Qian Zhu 003; Joshua C. Denny; Jyotishman Pathak; William K. Thompson; et al. (J. Am. Medical Informatics Assoc., 2015)

An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. - Guoqian Jiang; William K. Thompson; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; Huan Mo; Peter Speltz; Joshua C. Denny; Jyotishman Pathak (AMIA, 2016)

A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. - Huan Mo; Guoqian Jiang; Jennifer A. Pacheco; Richard C. Kiefer; Luke V. Rasmussen; Jyotishman Pathak; Joshua C. Denny; William K. Thompson (CRI, 2016)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Jacqueline Kirby; Peter Speltz; Luke V. Rasmussen; Melissa A. Basford; Omri Gottesman; Peggy L. Peissig; Jennifer A. Pacheco; Gerard Tromp; Jyotishman Pathak; David S. Carrell; Stephen B. Ellis; Todd Lingren; et al. (J. Am. Medical Informatics Assoc., 2016)

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. - Guoqian Jiang; Richard C. Kiefer; Luke V. Rasmussen; Harold R. Solbrig; Huan Mo; Jennifer A. Pacheco; Jie Xu 011; Enid N. H. Montague; William K. Thompson; Joshua C. Denny; Christopher G. Chute; Jyotishman Pathak (J. Biomed. Informatics, 2016)

A Machine Learning-Based Approach for Identifying Atopic Dermatitis in Adults from Electronic Health Records. - Erin N. Gustafson; Al'ona Furmanchuk; Jennifer A. Pacheco; Firas H. Wehbe; Kathryn L. Jackson; Abel N. Kho; William K. Thompson; Jonathan Silverberg (AMIA, 2017)

Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. - Richard C. Kiefer; Luke V. Rasmussen; Jennifer A. Pacheco; Peter Speltz; Joshua C. Denny; William K. Thompson; Jyotishman Pathak; Guoqian Jiang (AMIA, 2017)

The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. - Peter Speltz; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; William K. Thompson; Guoqian Jiang; Jyotishman Pathak; Joshua C. Denny (AMIA, 2017)

A Machine Learning Algorithm for Identifying Atopic Dermatitis in Adults from Electronic Health Records. - Erin N. Gustafson; Jennifer A. Pacheco; Firas H. Wehbe; Jonathan Silverberg; William K. Thompson (ICHI, 2017)

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. - Jennifer A. Pacheco; Luke V. Rasmussen; Richard C. Kiefer; Thomas R. Campion Jr.; Peter Speltz; Robert J. Carroll; Sarah C. Stallings; Huan Mo; Monika Ahuja; Guoqian Jiang; Eric R. LaRose; Peggy L. Peissig; et al. (J. Am. Medical Informatics Assoc., 2018)