Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. - William L. Trimble; Kevin P. Keegan; Mark D'Souza; Andreas Wilke; Jared Wilkening; Jack A. Gilbert; Folker Meyer (BMC Bioinform., 2012)

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. - Kevin P. Keegan; William L. Trimble; Jared Wilkening; Andreas Wilke; Travis Harrison; Mark D'Souza; Folker Meyer (PLoS Comput. Biol., 2012)

Shock: Active Storage for Multicloud Streaming Data Analysis. - Andreas Wilke; Wolfgang Gerlach; Travis Harrison; Tobias Paczian; Wei Tang 001; William L. Trimble; Jared Wilkening; Narayan Desai; Folker Meyer (BDC, 2015)

The MG-RAST metagenomics database and portal in 2015. - Andreas Wilke; Jared Bischof; Wolfgang Gerlach; Elizabeth M. Glass; Travis Harrison; Kevin P. Keegan; Tobias Paczian; William L. Trimble; Saurabh Bagchi; Ananth Grama; Somali Chaterji; Folker Meyer (Nucleic Acids Res., 2016)

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. - Folker Meyer; Saurabh Bagchi; Somali Chaterji; Wolfgang Gerlach; Ananth Grama; Travis Harrison; Tobias Paczian; William L. Trimble; Andreas Wilke (Briefings Bioinform., 2019)

The MG-RAST API explorer: an on-ramp for RESTful query composition. - Tobias Paczian; William L. Trimble; Wolfgang Gerlach; Travis Harrison; Andreas Wilke; Folker Meyer (BMC Bioinform., 2019)

Incremental & Semi-Supervised Learning for Functional Analysis of Protein Sequences. - Mali Halac; Bahrad A. Sokhansanj; William L. Trimble; Thomas Coard; Norman C. Sabin; Emrecan Ozdogan; Robi Polikar; Gail L. Rosen (SSCI, 2021)

Incremental and Semi-Supervised Learning of 16S-rRNA Genes For Taxonomic Classification. - Emrecan Ozdogan; Norman C. Sabin; Thomas Gracie; Steven Portley; Mali Halac; Thomas Coard; William L. Trimble; Bahrad A. Sokhansanj; Gail Rosen; Robi Polikar (SSCI, 2021)