Bayesian modeling of recombination events in bacterial populations. - Pekka Marttinen; Adam Baldwin; William P. Hanage; Chris Dowson; Eshwar Mahenthiralingam; Jukka Corander (BMC Bioinform., 2008)

Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach. - Jing Tang 002; William P. Hanage; Christophe Fraser; Jukka Corander (PLoS Comput. Biol., 2009)

Random projection based clustering for population genomics. - Sotiris K. Tasoulis; Lu Cheng 004; Niko Välimäki; Nicholas J. Croucher; Simon R. Harris; William P. Hanage; Teemu Roos; Jukka Corander (IEEE BigData, 2014)

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data. - Colin J. Worby; Marc Lipsitch; William P. Hanage (PLoS Comput. Biol., 2014)

Speciation trajectories in recombining bacterial species. - Pekka Marttinen; William P. Hanage (PLoS Comput. Biol., 2017)

Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study. - Ivan Specht; Kian Sani; Bryn C. Loftness; Curtis S. Hoffmann; Gabrielle Gionet; Amy Bronson; John Marshall; Craig Decker; Landen Bailey; Tomi Siyanbade; Molly Kemball; Brett E. Pickett; et al. (Patterns, 2022)