The sparse data extrapolation problem: strategies for soft-tissue correction for image-guided liver surgery. - Michael I. Miga; Prashanth Dumpuri; Amber L. Simpson; Jared A. Weis; William R. Jarnagin (Image-Guided Procedures, 2011)

Texture feature analysis for prediction of postoperative liver failure prior to surgery. - Amber L. Simpson; Richard K. G. Do; E. Patricia Parada; Michael I. Miga; William R. Jarnagin (Image Processing, 2014)

A Mechanics-Based Nonrigid Registration Method for Liver Surgery Using Sparse Intraoperative Data. - D. Caleb Rucker; Yifei Wu; Logan W. Clements; Janet E. Ondrake; Thomas S. Pheiffer; Amber L. Simpson; William R. Jarnagin; Michael I. Miga (IEEE Trans. Medical Imaging, 2014)

Validation of model-based deformation correction in image-guided liver surgery via tracked intraoperative ultrasound: preliminary method and results. - Logan W. Clements; Jarrod A. Collins; Yifei Wu; Amber L. Simpson; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2015)

Method for evaluation of predictive models of microwave ablation via post-procedural clinical imaging. - Jarrod A. Collins; Daniel B. Brown; T. Peter Kingham; William R. Jarnagin; Michael I. Miga; Logan W. Clements (Image-Guided Procedures, 2015)

Image guidance improves localization of sonographically occult colorectal liver metastases. - Universe Leung; Amber L. Simpson; Lauryn B. Adams; William R. Jarnagin; Michael I. Miga; T. Peter Kingham (Image-Guided Procedures, 2015)

Preoperative assessment of microvascular invasion in hepatocellular carcinoma. - Jayasree Chakraborty; Jian Zheng; Mithat Gönen; William R. Jarnagin; Ronald P. DeMatteo; Richard K. G. Do; Amber L. Simpson (Computer-Aided Diagnosis, 2017)

On the nature of data collection for soft-tissue image-to-physical organ registration: a noise characterization study. - Jarrod A. Collins; Jon S. Heiselman; Jared A. Weis; Logan W. Clements; Amber L. Simpson; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2017)

Emulation of the laparoscopic environment for image-guided liver surgery via an abdominal phantom system with anatomical ligamenture. - Jon S. Heiselman; Jarrod A. Collins; Logan W. Clements; Jared A. Weis; Amber L. Simpson; Sunil K. Geevarghese; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2017)

Toward integrated image guided liver surgery. - William R. Jarnagin; Amber L. Simpson; Michael I. Miga (Image-Guided Procedures, 2017)

Liver segmentation in color images. - Burton Ma; T. Peter Kingham; Michael I. Miga; William R. Jarnagin; Amber L. Simpson (Image-Guided Procedures, 2017)

Improving Registration Robustness for Image-Guided Liver Surgery in a Novel Human-to-Phantom Data Framework. - Jarrod A. Collins; Jared A. Weis; Jon S. Heiselman; Logan W. Clements; Amber L. Simpson; William R. Jarnagin; Michael I. Miga (IEEE Trans. Medical Imaging, 2017)

Deep convolutional neural network for the classification of hepatocellular carcinoma and intrahepatic cholangiocarcinoma. - Abhishek Midya; Jayasree Chakraborty; Linda M. Pak; Jian Zheng; William R. Jarnagin; Richard K. G. Do; Amber L. Simpson (Computer-Aided Diagnosis, 2018)

Technical note: Nonrigid registration for laparoscopic liver surgery using sparse intraoperative data. - Jon S. Heiselman; Jarrod A. Collins; Logan W. Clements; Jared A. Weis; Amber L. Simpson; Sunil K. Geevarghese; T. Peter Kingham; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2018)

Unsupervised Subtyping of Cholangiocarcinoma Using a Deep Clustering Convolutional Autoencoder. - Hassan Muhammad; Carlie S. Sigel; Gabriele Campanella; Thomas Börner; Linda M. Pak; Stefan Büttner; Jan N. M. IJzermans; Bas Groot Koerkamp; Michael Doukas; William R. Jarnagin; Amber L. Simpson; Thomas J. Fuchs (MICCAI (1), 2019)

A large annotated medical image dataset for the development and evaluation of segmentation algorithms. - Amber L. Simpson; Michela Antonelli; Spyridon Bakas; Michel Bilello; Keyvan Farahani; Bram van Ginneken; Annette Kopp-Schneider; Bennett A. Landman; Geert Litjens 001; Bjoern H. Menze; Olaf Ronneberger; Ronald M. Summers; et al. (CoRR, 2019)

Towards Unsupervised Cancer Subtyping: Predicting Prognosis Using A Histologic Visual Dictionary. - Hassan Muhammad; Carlie S. Sigel; Gabriele Campanella; Thomas Börner; Linda M. Pak; Stefan Büttner; Jan N. M. IJzermans; Bas Groot Koerkamp; Michael Doukas; William R. Jarnagin; Amber L. Simpson; Thomas J. Fuchs (CoRR, 2019)

A combined radiomics and cyst fluid inflammatory markers model to predict preoperative risk in pancreatic cystic lesions. - Travis L. Williams; Kate A. Harrington; Sharon A. Lawrence; Jayasree Chakraborty; Mohammad A. Al Efishat; Marc A. Attiyeh; Gokce Askan; Yuting Chou; Alessandra Pulvirenti; Caitlin A. McIntyre; Mithat Gonen; Olca Basturk; et al. (Image-Guided Procedures, 2020)

Intraoperative Correction of Liver Deformation Using Sparse Surface and Vascular Features via Linearized Iterative Boundary Reconstruction. - Jon S. Heiselman; William R. Jarnagin; Michael I. Miga (IEEE Trans. Medical Imaging, 2020)

The Medical Segmentation Decathlon. - Michela Antonelli; Annika Reinke; Spyridon Bakas; Keyvan Farahani; Annette Kopp-Schneider; Bennett A. Landman; Geert Litjens 001; Bjoern H. Menze; Olaf Ronneberger; Ronald M. Summers; Bram van Ginneken; Michel Bilello; et al. (CoRR, 2021)

CT radiomics to predict early hepatic recurrence after resection for intrahepatic cholangiocarcinoma. - Jayasree Chakraborty; Joshua S. Jolissaint; Tiegong Wang; Kevin C. Soares; Mithat Gonen; Linda M. Pak; Thomas Börner; Richard K. G. Do; Vinod P. Balachandran; Michael I. D'Angelica; Jeffrey A. Drebin; T. Peter Kingham; et al. (Computer-Aided Diagnosis, 2022)

Registration uncertainty in deforming organs: a novel approach for ensuring navigational confidence during image-guided procedures. - Jon S. Heiselman; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2022)

Leveraging Contrastive Learning with SimSiam for the Classification of Primary and Secondary Liver Cancers. - Ramtin Mojtahedi; Mohammad Hamghalam; William R. Jarnagin; Richard K. G. Do; Amber L. Simpson (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Comparison study of sparse data-driven soft tissue registration: preliminary results from the image-to-physical liver registration sparse data challenge. - Jon S. Heiselman; Jarrod A. Collins; Morgan J. Ringel; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2023)

Comparison study of intraoperative surface acquisition methods for surgical navigation. - Bowen Xiang; Jon S. Heiselman; Winona L. Richey; William R. Jarnagin; Michael I. Miga (Image-Guided Procedures, 2023)

Computerized Diagnosis of Liver Tumors From CT Scans Using a Deep Neural Network Approach. - Abhishek Midya; Jayasree Chakraborty; Rami Srouji; Raja R. Narayan; Thomas Börner; Jian Zheng; Linda M. Pak; John M. Creasy; Luz A. Escobar; Kate A. Harrington; Mithat Gönen; Michael I. D'Angelica; et al. (IEEE J. Biomed. Health Informatics, 2023)

Comparing regularized Kelvinlet functions and the finite element method for registration of medical images to sparse organ data. - Morgan J. Ringel; Jon S. Heiselman; Winona L. Richey; Ingrid M. Meszoely; William R. Jarnagin; Michael I. Miga (Medical Image Anal., 2024)

Comparing the Effects of Persistence Barcodes Aggregation and Feature Concatenation on Medical Imaging. - Dashti A. Ali; Richard K. G. Do; William R. Jarnagin; Aras T. Asaad; Amber L. Simpson (CoRR, 2025)