A dictionary based approach for gene annotation. - Lior Pachter; Serafim Batzoglou; Valentin I. Spitkovsky; William S. Beebee; Eric S. Lander; Bonnie Berger; Daniel J. Kleitman (RECOMB, 1999)

An Implementation of Scoped Memory for Real-Time Java. - William S. Beebee; Martin C. Rinard (EMSOFT, 2001)

Utilitiy Accrual Scheduling with Real-Time Java. - Shahrooz Feizabadi; William S. Beebee; Binoy Ravindran; Peng Li 020; Martin C. Rinard (OTM Workshops, 2003)

Ownership types for safe region-based memory management in real-time Java. - Chandrasekhar Boyapati; Alexandru Salcianu; William S. Beebee; Martin C. Rinard (PLDI, 2003)

Enhancing Server Availability and Security Through Failure-Oblivious Computing. - Martin C. Rinard; Cristian Cadar; Daniel Dumitran; Daniel M. Roy 001; Tudor Leu; William S. Beebee (OSDI, 2004)