Applications of GeneMark in Multispecies Environments. - James D. McIninch; William S. Hayes; Mark Borodovsky (ISMB, 1996)

AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names. - Raf M. Podowski; John G. Cleary; Nicholas T. Goncharoff; Gregory Amoutzias; William S. Hayes (CSB, 2004)

Suregene, a Scalable System for Automated Term Disambiguation of Gene and Protein Names. - Raf M. Podowski; John G. Cleary; Nicholas T. Goncharoff; Gregory Amoutzias; William S. Hayes (J. Bioinform. Comput. Biol., 2005)

Information Needs and the Role of Text Mining in Drug Development. - Phoebe M. Roberts; William S. Hayes (Pacific Symposium on Biocomputing, 2008)