Aligned microcontact printing of micrometer-scale poly-L-Lysine structures for controlled growth of cultured neurons on planar microelectrode arrays. - Conrad D. James; Robert Davis; M. Meyer; A. Turner; S. Turner; G. Withers; Lance C. Kam; Gary Banker; Harold G. Craighead; Michael S. Isaacson; James N. Turner; William Shain (IEEE Trans. Biomed. Eng., 2000)

Computer Vision Algorithms for Quantifying the Growth and Behavior of Neurons Cultured on Nanofabricated Surfaces. - Muhammad-Amri Abdul-Karim; Khalid A. Al-Kofahi; Badrinath Roysam; Natalie M. Dowell-Mesfin; Rifat J. Hussain; William Shain; James N. Turner (CVPR Workshops, 2003)

Median-based robust algorithms for tracing neurons from noisy confocal microscope images. - Khalid A. Al-Kofahi; Ali Can; Sharie Lasek; Donald H. Szarowski; Natalie M. Dowell-Mesfin; William Shain; James N. Turner; Badrinath Roysam (IEEE Trans. Inf. Technol. Biomed., 2003)

Extracellular recordings from patterned neuronal networks using planar microelectrode arrays. - Conrad D. James; Andrew J. H. Spence; Natalie M. Dowell-Mesfin; Rifat J. Hussain; Karen L. Smith; Harold G. Craighead; Michael S. Isaacson; William Shain; James N. Turner (IEEE Trans. Biomed. Eng., 2004)

Model neural prostheses with integrated microfluidics: a potential intervention strategy for controlling reactive cell and tissue responses. - Scott T. Retterer; Karen L. Smith; Christopher Björnsson; Keith B. Neeves; Andrew J. H. Spence; James N. Turner; William Shain; Michael S. Isaacson (IEEE Trans. Biomed. Eng., 2004)

Automated 3-D Quantification of Brain Tissue at tThe Cellular Scale from Multi-Parameter Confocal Microscopy Images. - Gang Lin; Yousef Al-Kofahi; James Alexander Tyrrell; Christopher Björnsson; William Shain; Badrinath Roysam (ISBI, 2007)

Electrical stimulation-induced cell clustering in cultured neural networks. - Sang Beom Jun; Matthew R. Hynd; Karen L. Smith; Jong Keun Song; James N. Turner; William Shain; Sung June Kim (Medical Biol. Eng. Comput., 2007)

The Central Role of Neuroinformatics in the National Academy of Engineering's Grandest Challenge: Reverse Engineer the Brain. - Badrinath Roysam; William Shain; Giorgio A. Ascoli (Neuroinformatics, 2009)

Optical monitoring of neural networks evoked by focal electrical stimulation on microelectrode arrays using FM dyes. - Sang Beom Jun; Karen L. Smith; William Shain; Natalie M. Dowell-Mesfin; Sung June Kim; Matthew R. Hynd (Medical Biol. Eng. Comput., 2010)

Robust Adaptive 3-D Segmentation of Vessel Laminae From Fluorescence Confocal Microscope Images and Parallel GPU Implementation. - Arunachalam Narayanaswamy; Saritha Dwarakapuram; Christopher Björnsson; Barbara Cutler; William Shain; Badrinath Roysam (IEEE Trans. Medical Imaging, 2010)

Quantitative profiling of microglia populations using harmonic co-clustering of arbor morphology measurements. - Yanbin Lu; Kristen Trett; William Shain; Lawrence Carin; Ronald R. Coifman; Badrinath Roysam (ISBI, 2013)

Unsupervised inference of arbor morphology progression for microglia from confocal microscope images. - Yan Xu; Michalis A. Savelonas; Peng Qiu; Kristen Trett; William Shain; Badrinath Roysam (ISBI, 2013)

Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors. - Murad Megjhani; Nicolas Rey-Villamizar; Amine Merouane; Yanbin Lu; Amit Mukherjee; Kristen Trett; Peter H. J. Chong; Carolyn Harris; William Shain; Badrinath Roysam (Bioinform., 2015)

Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure. - Yanbin Lu; Lawrence Carin; Ronald R. Coifman; William Shain; Badrinath Roysam (Neuroinformatics, 2015)

Unsupervised Profiling of Microglial Arbor Morphologies and Distribution Using a Nonparametric Bayesian Approach. - Yan Xu; Murad Megjhani; Kristen Trett; William Shain; Badrinath Roysam; Zhu Han 001 (IEEE J. Sel. Top. Signal Process., 2016)