A curvicylindrical coordinate system for the visualization and segmentation of the ascidian tail. - Golnaz Abdollahian; Michael Veeman; William Smith 001; B. S. Manjunath (ISBI, 2011)

An automatic feature based model for cell segmentation from confocal microscopy volumes. - Diana L. Delibaltov; Pratim Ghosh; Michael Veeman; William Smith 001; B. S. Manjunath (ISBI, 2011)

A Linear Program Formulation for the Segmentation of Ciona Membrane Volumes. - Diana L. Delibaltov; Pratim Ghosh; Volkan Rodoplu; Michael Veeman; William Smith 001; B. S. Manjunath (MICCAI (1), 2013)

Membrane segmentation via active learning with deep networks. - Utkarsh Gaur; Matthew Kourakis; Erin Newman-Smith; William Smith 001; B. S. Manjunath (ICIP, 2016)

CellECT: cell evolution capturing tool. - Diana L. Delibaltov; Utkarsh Gaur; Jennifer Kim; Matthew Kourakis; Erin Newman-Smith; William Smith 001; Samuel A. Belteton; Daniel Szymanski; B. S. Manjunath (BMC Bioinform., 2016)

3D Neuron Morphology Analysis. - Jiaxiang Jiang; Michael Goebel; Cezar Borba; William Smith 001; B. S. Manjunath (CoRR, 2022)

A robust approach to 3D neuron shape representation for quantification and classification. - Jiaxiang Jiang; Michael Goebel; Cezar Borba; William Smith 001; B. S. Manjunath (BMC Bioinform., 2023)