Some Computations with Heeke Rings and Deformation Rings. - Joan-Carles Lario; René Schoof; Amod Agashe; William Stein (Exp. Math., 2002)

SAGE: system for algebra and geometry experimentation. - William Stein; David Joyner (SIGSAM Bull., 2005)

Visible evidence for the Birch and Swinnerton-Dyer conjecture for modular abelian varieties of analytic rank zero. - Amod Agashe; William Stein; Barry Mazur; John Cremona (Math. Comput., 2005)

The Sage Project: Unifying Free Mathematical Software to Create a Viable Alternative to Magma, Maple, Mathematica and MATLAB. - Burçin Eröcal; William Stein (ICMS, 2010)

Panorama Image Construction Using Multiple-Photos Stitching from Biological Data. - Joshua Rosenkranz; Yuan Xu; Xing Zhang 012; Lijun Yin 001; William Stein (ISVC (2), 2012)

Algorithms for the arithmetic of elliptic curves using Iwasawa theory. - William Stein; Christian Wüthrich (Math. Comput., 2013)

p-adic heights of Heegner points and Λ-adic regulators. - Jennifer S. Balakrishnan; Mirela Çiperiani; William Stein (Math. Comput., 2015)

Beyond the black box. - Jeroen Demeyer; William Stein; Ursula Whitcher (CoRR, 2016)

Databases of elliptic curves ordered by height and distributions of Selmer groups and ranks. - Jennifer S. Balakrishnan; Wei Ho; Nathan Kaplan; Simon Spicer; William Stein; James Weigandt (LMS J. Comput. Math., 2016)

A p-adic analogue of the conjecture of Birch and Swinnerton-Dyer for modular abelian varieties. - Jennifer S. Balakrishnan; Jan Steffen Müller; William Stein (Math. Comput., 2016)