Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data. - William W. Greenwald; He Li; Erin N. Smith; Paola Benaglio; Naoki Nariai; Kelly A. Frazer (BMC Bioinform., 2017)

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions. - Erol S. Kavvas; Yara Seif; James T. Yurkovich; Charles J. Norsigian; Saugat Poudel; William W. Greenwald; Sankha Ghatak; Bernhard O. Palsson; Jonathan M. Monk (BMC Syst. Biol., 2018)