IslandPath: aiding detection of genomic islands in prokaryotes. - William W. L. Hsiao; Ivan Wan; Steven J. M. Jones; Fiona S. L. Brinkman (Bioinform., 2003)

Evaluation of genomic island predictors using a comparative genomics approach. - Morgan G. I. Langille; William W. L. Hsiao; Fiona S. L. Brinkman (BMC Bioinform., 2008)

MicrobeDB: a locally maintainable database of microbial genomic sequences. - Morgan G. I. Langille; Matthew R. Laird; William W. L. Hsiao; Terry A. Chiu; Jonathan A. Eisen; Fiona S. L. Brinkman (Bioinform., 2012)

EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. - Hsueh-Ting Chu; William W. L. Hsiao; Jen-Chih Chen; Tze-Jung Yeh; Mong-Hsun Tsai; Han Lin; Yen-Wenn Liu; Sheng-An Lee; Chaur-Chin Chen; Theresa Tsao; Cheng-Yan Kao (Bioinform., 2013)

An OBI Ontology Datum Proof Sheet. - Damion M. Dooley; Emma J. Griffiths; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO/BioCreative, 2016)

FoodON: A Global Farm-to-Fork Food Ontology. - Emma J. Griffiths; Damion M. Dooley; Pier Luigi Buttigieg; Robert Hoehndorf; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO/BioCreative, 2016)

Sequence database versioning for command line and Galaxy bioinformatics servers. - Damion M. Dooley; Aaron J. Petkau; Gary H. Van Domselaar; William W. L. Hsiao (Bioinform., 2016)

FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata. - Dalia A. Alghamdi; Damion M. Dooley; Gurinder Gosal; Emma J. Griffiths; Fiona S. L. Brinkman; William W. L. Hsiao (ICBO, 2017)

The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform. - Damion M. Dooley; Emma J. Griffiths; Gurinder Gosal; Fiona S. L. Brinkman; William W. L. Hsiao (JOWO, 2017)

NGBO: The Introduction of -omics Data to Biobanking Ontology. - Dalia A. Alghamdi; Damion M. Dooley; Emma J. Griffiths; Gurinder Pal Gosal; William W. L. Hsiao (ISWC (P&D/Industry/BlueSky), 2018)

NGBO: Introducing -omics Data into Biobanking Ontology. - Dalia A. Alghamdi; Damion M. Dooley; Gurinder Gosal; Emma J. Griffiths; William W. L. Hsiao (ICBO, 2019)

3D Visualization of Application Ontology Class Hierarchies. - Damion M. Dooley; William W. L. Hsiao (JOWO, 2019)

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. - Brian P. Alcock; Amogelang R. Raphenya; Tammy T. Y. Lau; Kara K. Tsang; Mégane Bouchard; Arman Edalatmand; William Huynh; Anna-Lisa V. Nguyen; Annie A. Cheng; Sihan Liu; Sally Y. Min; Anatoly Miroshnichenko; et al. (Nucleic Acids Res., 2020)

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. - Brian P. Alcock; William Huynh; Romeo Chalil; Keaton W. Smith; Amogelang R. Raphenya; Mateusz A. Wlodarski; Arman Edalatmand; Aaron J. Petkau; Sohaib A. Syed; Kara K. Tsang; Sheridan J. C. Baker; Mugdha Dave; et al. (Nucleic Acids Res., 2023)