Steered Molecular Dynamics. - Sergei Izrailev; Sergey B. Stepaniants; Barry Isralewitz; Dorina Kosztin; Hui Lu; Ferenc Molnár; Willy Wriggers; Klaus Schulten (Computational Molecular Dynamics, 1999)

Topology representing neural networks reconcile biomolecular shape, structure, and dynamics. - Willy Wriggers; Pablo Chacón; Julio A. Kovacs; Florence Tama; Stefan Birmanns (Neurocomputing, 2004)

Biomolecular pleiomorphism probed by spatial interpolation of coarse models. - Mirabela Rusu; Stefan Birmanns; Willy Wriggers (Bioinform., 2008)

Comparison of an atomic model and its cryo-EM image at the central axis of a helix. - Jing He 002; Stephanie Zeil; Hussam Hallak; Kele McKaig; Julio A. Kovacs; Willy Wriggers (BIBM, 2015)

Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor. - Manuel Wahle; Willy Wriggers (PLoS Comput. Biol., 2015)

Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix. - Stephanie Zeil; Julio A. Kovacs; Willy Wriggers; Jing He 002 (J. Comput. Biol., 2017)

A Pattern Recognition Tool for Medium-Resolution Cryo-EM Density Maps and Low-Resolution Cryo-ET Density Maps. - Devin Haslam; Salim Sazzed; Willy Wriggers; Julio Kovcas; Junha Song; Manfred Auer; Jing He 002 (ISBRA, 2018)

Frontiers in CryoEM Modeling. - Giulia Palermo; Yuji Sugita; Willy Wriggers; Rommie E. Amaro (J. Chem. Inf. Model., 2019)

Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution. - Julio A. Kovacs; Junha Song; Manfred Auer; Jing He 002; Wade Hunter; Willy Wriggers (J. Chem. Inf. Model., 2020)

Faces of Contemporary CryoEM Information and Modeling. - Giulia Palermo; Yuji Sugita; Willy Wriggers; Rommie E. Amaro (J. Chem. Inf. Model., 2020)

Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps. - Salim Sazzed; Peter Scheible; Maytha Alshammari; Willy Wriggers; Jing He 002 (J. Chem. Inf. Model., 2020)

Tracing Filaments in Simulated 3D Cryo-Electron Tomography Maps Using a Fast Dynamic Programming Algorithm. - Salim Sazzed; Peter Scheible; Jing He 002; Willy Wriggers (BIBM, 2021)

TomoSim: Simulation of Filamentous Cryo-Electron Tomograms. - Peter Scheible; Salim Sazzed; Jing He 002; Willy Wriggers (BIBM, 2021)

Refinement of AlphaFold2 Models against Experimental Cryo-EM Density Maps at 4-6Å Resolution. - Maytha Alshammari; Jing He 002; Willy Wriggers (BIBM, 2022)

Tracing Randomly Oriented Filaments in a Simulated Actin Network Tomogram. - Salim Sazzed; Peter Scheible; Jing He 002; Willy Wriggers (BIBM, 2022)

AlphaFold2 Model Refinement Using Structure Decoys. - Maytha Alshammari; Jing He 002; Willy Wriggers (BCB, 2023)

A Data Set of Paired Structural Segments Between Protein Data Bank and AlphaFold DB for Medium-Resolution Cryo-EM Density Maps: A Gap in Overall Structural Quality. - Thu Nguyen; Willy Wriggers; Jing He 002 (ISBRA (3), 2024)