Online semi-supervised learning: Algorithm and application in metagenomics. - Sultan Imangaliyev; Bart Keijser; Wim Crielaard; Evgeni Tsivtsivadze (BIBM, 2013)

Personalized microbial network inference via co-regularized spectral clustering. - Sultan Imangaliyev; Bart Keijser; Wim Crielaard; Evgeni Tsivtsivadze (BIBM, 2014)

Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations. - Ali May; Sanne Abeln; Wim Crielaard; Jaap Heringa; Bernd W. Brandt (Bioinform., 2014)

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL. - Ali May; Sanne Abeln; Mark J. Buijs; Jaap Heringa; Wim Crielaard; Bernd W. Brandt (Nucleic Acids Res., 2015)

Deep Learning for Classification of Dental Plaque Images. - Sultan Imangaliyev; Monique H. van der Veen; Catherine M. C. Volgenant; Bart J. F. Keijser; Wim Crielaard; Evgeni Levin (MOD, 2016)

metaModules identifies key functional subnetworks in microbiome-related disease. - Ali May; Bernd W. Brandt; Mohammed El-Kebir; Gunnar W. Klau; Egija Zaura; Wim Crielaard; Jaap Heringa; Sanne Abeln (Bioinform., 2016)

Classification of Quantitative Light-Induced Fluorescence Images Using Convolutional Neural Network. - Sultan Imangaliyev; Monique H. van der Veen; Catherine M. C. Volgenant; Bruno G. Loos; Bart J. F. Keijser; Wim Crielaard; Evgeni Levin (CoRR, 2017)