The Usefulness of Recombination. - Wim Hordijk; Bernard Manderick (ECAL, 1995)

A Measure of Landscapes. - Wim Hordijk (Evol. Comput., 1996)

Mechanisms of Emergent Computation in Cellular Automata. - Wim Hordijk; James P. Crutchfield; Melanie Mitchell (PPSN, 1998)

Amplitude Spectra of Fitness Landscapes. - Wim Hordijk; Peter F. Stadler (Adv. Complex Syst., 1998)

Supertree algorithms for ancestral divergence dates and nested taxa. - Charles Semple; Philip Daniel; Wim Hordijk; Roderic D. M. Page; Mike A. Steel (Bioinform., 2004)

The Footprint Sorting Problem. - Claudia Fried; Wim Hordijk; Sonja J. Prohaska; Claus R. Stadler; Peter F. Stadler (J. Chem. Inf. Model., 2004)

Material Representations: From the Genetic Code to the Evolution of Cellular Automata. - Luis Mateus Rocha; Wim Hordijk (Artif. Life, 2005)

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood. - Wim Hordijk; Olivier Gascuel (Bioinform., 2005)

Correlation analysis of coupled fitness landscapes. - Wim Hordijk; Stuart A. Kauffman (Complex., 2005)

Cellular Automata for Image Noise Filtering. - P. Jebaraj Selvapeter; Wim Hordijk (NaBIC, 2009)

The Ideal Storage Cellular Automaton Model. - Andreas W. M. Dress; Wim Hordijk; Lin Wei; Peter Serocka (Structure Discovery in Biology: Motifs, Networks & Phylogenies, 2010)

Autocatalytic Sets and the Origin of Life. - Wim Hordijk; Jotun Hein; Mike A. Steel (Entropy, 2010)

The EvCA project: A brief history. - Wim Hordijk (Complex., 2013)

On RAF Sets and Autocatalytic Cycles in Random Reaction Networks. - Alessandro Filisetti; Marco Villani 001; Chiara Damiani; Alex Graudenzi; Andrea Roli; Wim Hordijk; Roberto Serra (WIVACE, 2014)

An investigation into irreducible autocatalytic sets and power law distributed catalysis. - Wim Hordijk; Leonard Hasenclever; Jie Gao; Dilyana Mincheva; Jotun Hein (Nat. Comput., 2014)

Algorithms for detecting and analysing autocatalytic sets. - Wim Hordijk; Joshua I. Smith 002; Mike A. Steel (Algorithms Mol. Biol., 2015)

A Genetic Algorithm for Finding Good Balanced Sequences in a Customer Assignment Problem with no State Information. - Wim Hordijk; Arie Hordijk; Bernd Heidergott (Asia Pac. J. Oper. Res., 2015)

Chasing the tail: The emergence of autocatalytic networks. - Wim Hordijk; Mike A. Steel (Biosyst., 2017)

Average Fitness Differences on NK Landscapes. - Wim Hordijk; Stuart A. Kauffman; Peter F. Stadler (Theory Biosci., 2020)