Phylogenetic trees: visualizing, customizing and detecting incongruence. - Geert Trooskens; David De Beule; Frederik Decouttere; Wim Van Criekinge (Bioinform., 2005)

PubMeth: a cancer methylation database combining text-mining and expert annotation. - Maté Ongenaert; Leander Van Neste; Tim De Meyer; Gerben Menschaert; Sofie Bekaert; Wim Van Criekinge (Nucleic Acids Res., 2008)

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. - Joachim M. De Schrijver; Kim De Leeneer; Steve Lefever; Nick Sabbe; Filip Pattyn; Filip Van Nieuwerburgh; Paul Coucke; Dieter Deforce; Jo Vandesompele; Sofie Bekaert; Jan Hellemans; Wim Van Criekinge (BMC Bioinform., 2010)

Accurate Long Read Mapping using Enhanced Suffix Arrays. - Michaël Vyverman; Joachim M. De Schrijver; Wim Van Criekinge; Peter Dawyndt; Veerle Fack (BIOINFORMATICS, 2011)

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model. - Kristof De Beuf; Joachim M. De Schrijver; Olivier Thas; Wim Van Criekinge; Rafael A. Irizarry; Lieven Clement (BMC Bioinform., 2012)

An update on sORFs.org: a repository of small ORFs identified by ribosome profiling. - Volodimir Olexiouk; Wim Van Criekinge; Gerben Menschaert (Nucleic Acids Res., 2018)

MEXPRESS update 2019. - Alexander Koch 006; Jana Jeschke; Wim Van Criekinge; Manon van Engeland; Tim De Meyer (Nucleic Acids Res., 2019)

Hyperdimensional computing: A fast, robust, and interpretable paradigm for biological data. - Michiel Stock; Wim Van Criekinge; Dimitri Boeckaerts; Steff Taelman; Maxime Van Haeverbeke; Pieter Dewulf; Bernard De Baets (PLoS Comput. Biol., 2024)