ANNIE: integrated de novo protein sequence annotation. - Hong Sain Ooi; Chia Yee Kwoh; Michael Wildpaner; Fernanda L. Sirota; Birgit Eisenhaber; Sebastian Maurer-Stroh; Wing-Cheong Wong; Alexander Schleiffer; Frank Eisenhaber; Georg Schneider 001 (Nucleic Acids Res., 2009)

R-POPTVR: A Novel Reinforcement-Based POPTVR Fuzzy Neural Network for Pattern Classification. - Wing-Cheong Wong; Siu-Yeung Cho; Chai Quek (IEEE Trans. Neural Networks, 2009)

More Than 1, 001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (PLoS Comput. Biol., 2010)

The Janus-Faced E-Values of Hmmer2: Extreme Value Distribution or logistic Function? - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2011)

Towards a complete sequence homology concept: Limitations and applications - Wing-Cheong Wong (2011)

Transmembrane helix: simple or complex. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Georg Schneider 001; Frank Eisenhaber (Nucleic Acids Res., 2012)

A Simple Shortcut to Unsupervised Alignment-Free phylogenetic genome Groupings, even from Unassembled sequencing reads. - Sebastian Maurer-Stroh; Vithiagaran Gunalan; Wing-Cheong Wong; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2014)

Translational Informatics Management System (TIMS): Towards OMICS based clinical data management for long term curation of clinical studies. - Weihong Tay; Erwin Tantoso; Frank Eisenhaber; Wing-Cheong Wong (J. Open Source Softw., 2019)