CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. - Wing Chung Wong; Dewey Kim; Hannah Carter; Mark Diekhans; Michael C. Ryan; Rachel Karchin (Bioinform., 2011)

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts. - Michael C. Ryan; James A. Cleland; RyangGuk Kim; Wing Chung Wong; John N. Weinstein (Bioinform., 2012)

TCGASpliceSeq a compendium of alternative mRNA splicing in cancer. - Michael C. Ryan; Wing Chung Wong; Robert Brown; Rehan Akbani; Xiaoping Su; Bradley M. Broom; James M. Melott; John N. Weinstein (Nucleic Acids Res., 2016)