Image Restoration Using Gibbs Priors: Boundary Modeling, Treatment of Blurring, and Selection of Hyperparameter. - Valen E. Johnson; Wing Hung Wong; Xiaoping Hu 001; Chin-Tu Chen (IEEE Trans. Pattern Anal. Mach. Intell., 1991)

Analytical Considerations of Photon Attenuation and System Response Function in SPECT Reconstruction. - Xiaochuan Pan; Chin-Tu Chen; John N. Aarsvold; Wing Hung Wong (IPMI, 1993)

Incorporation of correlated structural images in PET image reconstruction. - Xiaolong Ouyang; Wing Hung Wong; Valen E. Johnson; Xiaoping Hu 001; Chin-Tu Chen (IEEE Trans. Medical Imaging, 1994)

Torsional Relaxation for Biopolymers. - Wing Hung Wong; Yan Cui 001; Run Sheng Chen (J. Comput. Biol., 1998)

Relaxed Simulated Tempering for VLSI Floorplan Designs. - Jason Cong; Tianming Kong; Dongmin Xu; Faming Liang; Jun S. Liu; Wing Hung Wong (ASP-DAC, 1999)

Conditional entropy coding of VQ indexes for image compression. - Xiaolin Wu 001; Jiang Wen; Wing Hung Wong (IEEE Trans. Image Process., 1999)

Dynamic weighting Monte Carlo for constrained floorplan designs in mixed signal application. - Jason Cong; Tianming Kong; Faming Liang; Jun S. Liu; Wing Hung Wong; Dongmin Xu (ASP-DAC, 2000)

A Method for Tight Clustering: with Application to Microarray. - George C. Tseng; Wing Hung Wong (CSB, 2003)

ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis. - Sheng Zhong 003; Cheng Li 016; Wing Hung Wong (Nucleic Acids Res., 2003)

Towards Ubiquitous Bio-Information Computing: Data Protocols, Middleware, and Web Services for Heterogeneous Biological Information Integration and Retrieval. - Pengyu Hong; Sheng Zhong 003; Wing Hung Wong (BIBE, 2004)

Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework. - Sheng Zhong 003; Lu Tian; Cheng Li 016; Kai-Florian Storch; Wing Hung Wong (CSB, 2004)

In silico prediction of transcription factors that interact with the E2F family of transcription factors. - Sheng Zhong 003; Qing Zhou; Paloma Giangrande; Joseph R. Nevins; Wing Hung Wong (ICARCV, 2004)

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data. - Ming Lin; Lee-Jen Wei; William R. Sellers; Marshall Lieberfarb; Wing Hung Wong; Cheng Li 016 (Bioinform., 2004)

Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification. - Haiyan Huang; Ming-Chih J. Kao; Xianghong Jasmine Zhou; Jun S. Liu; Wing Hung Wong (J. Comput. Biol., 2004)

Computational Developments of ψ-learning. - Sijin Liu; Xiaotong Shen; Wing Hung Wong (SDM, 2005)

A boosting approach for motif modeling using ChIP-chip data. - Pengyu Hong; Xiaole Shirley Liu; Qing Zhou; Xin Lu; Jun S. Liu; Wing Hung Wong (Bioinform., 2005)

TileMap: create chromosomal map of tiling array hybridizations. - Hongkai Ji; Wing Hung Wong (Bioinform., 2005)

GeneNotes - A novel information management software for biologists. - Pengyu Hong; Wing Hung Wong (BMC Bioinform., 2005)

Ubic2 - Towards Ubiquitous Bio-Information Computing: Data Protocols, Middleware, and Web Services for Heterogeneous Biological Information Integration and Retrieval. - Pengyu Hong; Sheng Zhong 003; Wing Hung Wong (Int. J. Softw. Eng. Knowl. Eng., 2005)

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. - Ryung S. Kim; Hongkai Ji; Wing Hung Wong (BMC Bioinform., 2006)

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. - Xuegong Zhang; Xin Lu; Qian Shi; Xiu-qin Xu; Hon-chiu E. Leung; Lyndsay N. Harris; James D. Iglehart; Alexander Miron; Jun S. Liu; Wing Hung Wong (BMC Bioinform., 2006)

Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays. - Rameen Beroukhim; Ming Lin; Yuhyun Park; Ke Hao; Xiaojun Zhao; Levi A. Garraway; Edward A. Fox; Ephraim P. Hochberg; Ingo K. Mellinghoff; Matthias D. Hofer; Aurelien Descazeaud; Mark A. Rubin; et al. (PLoS Comput. Biol., 2006)

Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays. - Rameen Beroukhim; Ming Lin; Yuhyun Park; Ke Hao; Xiaojun Zhao; Levi A. Garraway; Edward A. Fox; Ephraim P. Hochberg; Ingo K. Mellinghoff; Matthias D. Hofer; Aurelien Descazeaud; Mark A. Rubin; et al. (PLoS Comput. Biol., 2007)

Optimal discovery of a stochastic genetic network. - Robin L. Raffard; Ovidiu Lipan; Wing Hung Wong; Claire J. Tomlin (ACC, 2008)

Reconfigurable computing for learning Bayesian networks. - Narges Bani Asadi; Teresa H. Meng; Wing Hung Wong (FPGA, 2008)

SeqMap: mapping massive amount of oligonucleotides to the genome. - Hui Jiang 002; Wing Hung Wong (Bioinform., 2008)

Cross-hybridization modeling on Affymetrix exon arrays. - Karen Kapur; Hui Jiang 002; Yi Xing; Wing Hung Wong (Bioinform., 2008)

Identifiability of isoform deconvolution from junction arrays and RNA-Seq. - David Hiller; Hui Jiang 002; Weihong Xu; Wing Hung Wong (Bioinform., 2009)

Statistical inferences for isoform expression in RNA-Seq. - Hui Jiang 002; Wing Hung Wong (Bioinform., 2009)

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells. - Feng Hong; Fang Fang; Xuming He 002; Xiaoyi Cao; Hiram Chipperfield; Dan Xie; Wing Hung Wong; Huck H. Ng; Sheng Zhong 003 (PLoS Comput. Biol., 2009)

CisGenome Browser: a flexible tool for genomic data visualization. - Hui Jiang 002; Fan Wang; Nigel P. Dyer; Wing Hung Wong (Bioinform., 2010)

Fast and accurate read alignment for resequencing. - John C. Mu; Hui Jiang 002; Amirhossein Kiani; Marghoob Mohiyuddin; Narges Bani Asadi; Wing Hung Wong (Bioinform., 2012)

A 7.11mJ/Gb/query data-driven machine learning processor (D2MLP) for big data analysis and applications. - Chang-Hung Tsai; Tung-Yu Wu; Shu-Yu Hsu; Chia-Ching Chu; Fang-Ju Ku; Ying-Siou Laio; Chih-Lung Chen; Wing Hung Wong; Hsie-Chia Chang; Chen-Yi Lee (VLSIC, 2014)

Modeling stochastic noise in gene regulatory systems. - Arwen Meister; Chao Du; Ye Henry Li; Wing Hung Wong (Quant. Biol., 2014)

A Hardware-Efficient Sigmoid Function With Adjustable Precision for a Neural Network System. - Chang-Hung Tsai; Yu-Ting Chih; Wing Hung Wong; Chen-Yi Lee (IEEE Trans. Circuits Syst. II Express Briefs, 2015)

A 41.3pJ/26.7pJ per neuron weight RBM processor for on-chip learning/inference applications. - Chang-Hung Tsai; Wan-Ju Yu; Wing Hung Wong; Chen-Yi Lee (A-SSCC, 2016)

Density Estimation via Discrepancy Based Adaptive Sequential Partition. - Dangna Li; Kun Yang; Wing Hung Wong (NIPS, 2016)

Convergence rates of a partition based Bayesian multivariate density estimation method. - Linxi Liu; Dangna Li; Wing Hung Wong (NIPS, 2017)

A 41.3/26.7 pJ per Neuron Weight RBM Processor Supporting On-Chip Learning/Inference for IoT Applications. - Chang-Hung Tsai; Wan-Ju Yu; Wing Hung Wong; Chen-Yi Lee (IEEE J. Solid State Circuits, 2017)

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks. - Ye Henry Li; Dangna Li; Nikolay Samusik; Xiaowei Wang; Leying Guan; Garry P. Nolan; Wing Hung Wong (PLoS Comput. Biol., 2017)

Diabetic Retinopathy Detection Based on Deep Convolutional Neural Networks. - Yi-Wei Chen; Tung-Yu Wu; Wing Hung Wong; Chen-Yi Lee (ICASSP, 2018)

Correlation-Based Face Detection for Recognizing Faces in Videos. - Heng-Wei Hsu; Tung-Yu Wu; Wing Hung Wong; Chen-Yi Lee (ICASSP, 2018)

Confnet: Predict with Confidence. - Sheng Wan; Tung-Yu Wu; Wing Hung Wong; Chen-Yi Lee (ICASSP, 2018)

A 1.86mJ/Gb/query bit-plane payload machine learning processor in 90nm CMOS. - Fang-Ju Ku; Tung-Yu Wu; Yen-Chin Liao; Hsie-Chia Chang; Wing Hung Wong; Chen-Yi Lee (VLSI-DAT, 2018)

Towards high performance data analytic on heterogeneous many-core systems: A study on Bayesian Sequential Partitioning. - Bo-Cheng Lai; Tung-Yu Wu; Tsou-Han Chiu; Kun-Chun Li; Chia-Ying Lee; Wei-Chen Chien; Wing Hung Wong (J. Parallel Distributed Comput., 2018)

QuatNet: Quaternion-Based Head Pose Estimation With Multiregression Loss. - Heng-Wei Hsu; Tung-Yu Wu; Sheng Wan; Wing Hung Wong; Chen-Yi Lee (IEEE Trans. Multim., 2019)

Roundtrip: A Deep Generative Neural Density Estimator. - Qiao Liu 008; Jiaze Xu; Rui Jiang 001; Wing Hung Wong (CoRR, 2020)

Feature Consistency Training With JPEG Compressed Images. - Sheng Wan; Tung-Yu Wu; Heng-Wei Hsu; Wing Hung Wong; Chen-Yi Lee (IEEE Trans. Circuits Syst. Video Technol., 2020)

MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting. - Meng Zou; Zhana Duren; Qiuyue Yuan; Henry Li; Andrew Paul Hutchins; Wing Hung Wong; Yong Wang 001 (Briefings Bioinform., 2021)

Simultaneous deep generative modelling and clustering of single-cell genomic data. - Qiao Liu 008; Shengquan Chen; Rui Jiang 001; Wing Hung Wong (Nat. Mach. Intell., 2021)

On the identifiability of the isoform deconvolution problem: application to select the proper fragment length in an RNA-seq library. - Juan A. Ferrer-Bonsoms; Xabier Morales; Pegah T. Afshar; Wing Hung Wong; Angel Rubio (Bioinform., 2022)

CausalEGM: a general causal inference framework by encoding generative modeling. - Qiao Liu 008; Zhongren Chen; Wing Hung Wong (CoRR, 2022)

DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility. - Qiao Liu 008; Kui Hua; Xuegong Zhang; Wing Hung Wong; Rui Jiang 001 (Genom. Proteom. Bioinform., 2022)

Convergence Rates of a Class of Multivariate Density Estimation Methods Based on Adaptive Partitioning. - Linxi Liu; Dangna Li; Wing Hung Wong (J. Mach. Learn. Res., 2023)

Revealing Free Energy Landscape From MD Data via Conditional Angle Partition Tree. - Hangjin Jiang; Han Li; Wing Hung Wong; Xiaodan Fan (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

HiChIPdb: a comprehensive database of HiChIP regulatory interactions. - Wanwen Zeng; Qiao Liu 008; Qijin Yin; Rui Jiang 001; Wing Hung Wong (Nucleic Acids Res., 2023)

CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network. - Xiangyu Pan; Zhaoxia Ma; Xinqi Sun; Hui Li; Tingting Zhang; Chen Zhao; Nini Wang; Rasmus Heller; Wing Hung Wong; Wen Wang; Yu Jiang; Yong Wang 001 (Genom. Proteom. Bioinform., 2023)

Generative Modeling for Tabular Data via Penalized Optimal Transport Network. - Wenhui Sophia Lu; Chenyang Zhong; Wing Hung Wong (CoRR, 2024)

An AI-powered Bayesian generative modeling approach for causal inference in observational studies. - Qiao Liu 008; Wing Hung Wong (CoRR, 2025)

Likelihood-Free Adaptive Bayesian Inference via Nonparametric Distribution Matching. - Wenhui Sophia Lu; Wing Hung Wong (CoRR, 2025)