Nonlinear diffusion of scalar images using well-posed differential operators. - Wiro J. Niessen; Bart M. ter Haar Romeny; Luc Florack; Alfons H. Salden; Max A. Viergever (CVPR, 1994)

Differatial Structure of Images: Accuracy of Representation. - Bart M. ter Haar Romeny; Wiro J. Niessen; Janita Wilting; Luc Florack (ICIP (1), 1994)

Numerical Analysis of Geometry-Driven Diffusion Equations. - Wiro J. Niessen; Bart M. ter Haar Romeny; Max A. Viergever (Geometry-Driven Diffusion in Computer Vision, 1994)

Blurring Strategies for Image Segmentation Using a Multiscale Linking Model. - Koen L. Vincken; Wiro J. Niessen; Max A. Viergever (CVPR, 1996)

Evaluation of Segmentation Algorithms for Intravascular Ultrasound Images. - Carolien J. Bouma; Wiro J. Niessen; Karel J. Zuiderveld; Elma J. Gussenhoven; Max A. Viergever (VBC, 1996)

Parallel Implementations of AOS Schemes: A Fast Way of Nonlinear Diffusion Filtering. - Joachim Weickert; Karel J. Zuiderveld; Bart M. ter Haar Romeny; Wiro J. Niessen (ICIP (3), 1997)

In Vivo Analysis of Trabecular Bone Architecture. - Wiro J. Niessen; A. M. López; W. J. van Enk; P. M. v. Roermund; Bart M. ter Haar Romeny; Max A. Viergever (IPMI, 1997)

Supervised Diffusion Parameter Selection for Filtering SPECT Brain Images. - Freek J. Beekman; Ed T. P. Slijpen; Wiro J. Niessen (Scale-Space, 1997)

On the Duality of Scalar and Density Flows. - Mads Nielsen; Wiro J. Niessen; Robert Maas; Luc Florack; Bart M. ter Haar Romeny (Scale-Space, 1997)

Multiscale Approach to Image Sequence Analysis. - Wiro J. Niessen; James S. Duncan; Mads Nielsen; Luc Florack; Bart M. ter Haar Romeny; Max A. Viergever (Comput. Vis. Image Underst., 1997)

Nonlinear Multiscale Representations for Image Segmentation. - Wiro J. Niessen; Koen L. Vincken; Joachim Weickert; Max A. Viergever (Comput. Vis. Image Underst., 1997)

A General Framework for Geometry-Driven Evolution Equations. - Wiro J. Niessen; Bart M. ter Haar Romeny; Luc Florack; Max A. Viergever (Int. J. Comput. Vis., 1997)

Automated lumen definition from 30 MHz intravascular ultrasound images. - Carolien J. Bouma; Wiro J. Niessen; Karel J. Zuiderveld; Elma J. Gussenhoven; Max A. Viergever (Medical Image Anal., 1997)

Optic Flow and Stereo. - Wiro J. Niessen; Robert Maas (Gaussian Scale-Space Theory, 1997)

Three Dimensional MR Brain Segmentation. - Wiro J. Niessen; Koen L. Vincken; Joachim Weickert; Max A. Viergever (ICCV, 1998)

Muliscale Vessel Enhancement Filtering. - Alejandro F. Frangi; Wiro J. Niessen; Koen L. Vincken; Max A. Viergever (MICCAI, 1998)

Fast Quantification of Abdominal Aortic Aneurysms from CTA Volumes. - Onno Wink; Wiro J. Niessen; Max A. Viergever (MICCAI, 1998)

Error Metrics for Quantitative Evaluation of Medical Image Segmentation. - Wiro J. Niessen; Carolien J. Bouma; Koen L. Vincken; Max A. Viergever (Theoretical Foundations of Computer Vision, 1998)

The Intrinsic Structure of Optic Flow Incorporating Measurement Duality. - Luc Florack; Wiro J. Niessen; Mads Nielsen (Int. J. Comput. Vis., 1998)

Geodesic Deformable Models for Medical Image Analysis. - Wiro J. Niessen; Bart M. ter Haar Romeny; Max A. Viergever (IEEE Trans. Medical Imaging, 1998)

Piecewise Polynomial Kernels for Image Interpolation: A Generalization of Cubic Convolution. - Erik H. W. Meijering; Wiro J. Niessen; Max A. Viergever (ICIP (3), 1999)

A Fast Image Registration Technique for Motion Artifact Reduction in DSA. - Erik H. W. Meijering; Karel J. Zuiderveld; Wiro J. Niessen; Max A. Viergever (ICIP (3), 1999)

The Sinc-Approximating Kernels of Classical Polynomial Interpolation. - Erik H. W. Meijering; Wiro J. Niessen; Max A. Viergever (ICIP (3), 1999)

Enhanced Artery Visualization in Blood Pool MRA: Results in the Peripheral Vasculature. - Wiro J. Niessen; Alexander Montauban van Swijndregt; Bernard Elsman; Onno Wink; Max A. Viergever; Willem Mali (IPMI, 1999)

Quantitation of Vessel Morphology from 3D MRA. - Alejandro F. Frangi; Wiro J. Niessen; Romhild M. Hoogeveen; Theo van Walsum; Max A. Viergever (MICCAI, 1999)

Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation. - Erik H. W. Meijering; Wiro J. Niessen; Josien P. W. Pluim; Max A. Viergever (MICCAI, 1999)

Pseudo-Linear Scale-Space Theory. - Luc Florack; Robert Maas; Wiro J. Niessen (Int. J. Comput. Vis., 1999)

Multiscale Segmentation of Three-Dimensional MR Brain Images. - Wiro J. Niessen; Koen L. Vincken; Joachim Weickert; Bart M. ter Haar Romeny; Max A. Viergever (Int. J. Comput. Vis., 1999)

Binocular Stereo from Grey-Scale Images. - Mads Nielsen; Robert Maas; Wiro J. Niessen; Luc Florack; Bart M. ter Haar Romeny (J. Math. Imaging Vis., 1999)

Model-Based Quantitation of 3D Magnetic Resonance Angiographic Images. - Alejandro F. Frangi; Wiro J. Niessen; Romhild M. Hoogeveen; Theo van Walsum; Max A. Viergever (IEEE Trans. Medical Imaging, 1999)

Retrospective Motion Correction in Digital Subtraction Angiography: A Review. - Erik H. W. Meijering; Wiro J. Niessen; Max A. Viergever (IEEE Trans. Medical Imaging, 1999)

Segmentation of Bone Tumor in MR Perfusion Images Using Neural Networks and Multiscale Pharmacokinetic Features. - Michael Egmont-Petersen; Alejandro F. Frangi; Wiro J. Niessen; P. C. W. Hogendoorn; Johan L. Bloem; Max A. Viergever; Johan H. C. Reiber (ICPR, 2000)

Minimum Cost Path Determination Using a Simple Heuristic Function. - Onno Wink; Wiro J. Niessen; Max A. Viergever (ICPR, 2000)

Guide Wire Tracking During Endovascular Interventions. - Shirley A. M. Baert; Wiro J. Niessen; Erik H. W. Meijering; Alejandro F. Frangi; Max A. Viergever (MICCAI, 2000)

Vascular Image Processing. - Wiro J. Niessen (SIBGRAPI, 2000)

Objective Quantifications of the Motion of Orbital Soft Tissues. - Michael Abramoff; Wiro J. Niessen; Max A. Viergever (IEEE Trans. Medical Imaging, 2000)

Fast Delineation and Visualization of Vessels in 3D Angiographic Images. - Onno Wink; Wiro J. Niessen; Max A. Viergever (IEEE Trans. Medical Imaging, 2000)

Automatic 3D ASM Construction via Atlas-Based Landmarking and Volumetric Elastic Registration. - Alejandro F. Frangi; Daniel Rueckert; Julia A. Schnabel; Wiro J. Niessen (IPMI, 2001)

Blood Pool Agent CE-MRA: Improved Arterial Visualization of the Aortoiliac Vasculature in the Steady-State Using First-Pass Data. - Cornelis M. van Bemmel; Wiro J. Niessen; Onno Wink; Bert Verdonck; Max A. Viergever (MICCAI, 2001)

Evaluation of Diffusion Techniques for Improved Vessel Visualization and Quantification in Three-Dimensional Rotational Angiography. - Erik Meijering; Wiro J. Niessen; Joachim Weickert; Max A. Viergever (MICCAI, 2001)

Vessel Axis Determination Using Wave Front Propagation Analysis. - Onno Wink; Wiro J. Niessen; Bert Verdonck; Max A. Viergever (MICCAI, 2001)

Objective and reproducible segmentation and quantification of tuberous sclerosis lesions in FLAIR brain MR images. - Tanja Alderliesten; Wiro J. Niessen; Koen L. Vincken; J. B. Antoine Maintz; Floor Jansen; Onno van Nieuwenhuizen; Max A. Viergever (Image Processing, 2001)

Semiautomatic aortic endograft localization for postoperative evaluation of endovascular aneurysm treatment. - Marleen de Bruijne; Wiro J. Niessen; J. B. Antoine Maintz; Max A. Viergever (Image Processing, 2001)

Bone tumor segmentation from MR perfusion images with neural networks using multi-scale pharmacokinetic features. - Alejandro F. Frangi; Michael Egmont-Petersen; Wiro J. Niessen; Johan H. C. Reiber; Max A. Viergever (Image Vis. Comput., 2001)

Quantitative evaluation of convolution-based methods for medical image interpolation. - Erik H. W. Meijering; Wiro J. Niessen; Max A. Viergever (Medical Image Anal., 2001)

Three-Dimensional Modeling for Functional Analysis of Cardiac Images: A Review. - Alejandro F. Frangi; Wiro J. Niessen; Max A. Viergever (IEEE Trans. Medical Imaging, 2001)

Geometric Partial Differential Equations and Image Analysis. - Wiro J. Niessen (IEEE Trans. Medical Imaging, 2001)

Model-based segmentation of cardiac and vascular images. - Wiro J. Niessen; Cornelis M. van Bemmel; Alejandro F. Frangi; M. J. A. Siers; Onno Wink (ISBI, 2002)

Simulation of Guide Wire Propagation for Minimally Invasive Vascular Interventions. - Tanja Alderliesten; Maurits K. Konings; Wiro J. Niessen (MICCAI (2), 2002)

3D Guide Wire Reconstruction from Biplane Image Sequences for 3D Navigation in Endovascular Interventions. - Shirley A. M. Baert; Everine B. van de Kraats; Wiro J. Niessen (MICCAI (1), 2002)

2D Guide Wire Tracking during Endovascular Interventions. - Shirley A. M. Baert; Wiro J. Niessen (MICCAI (2), 2002)

Level-Set Based Carotid Artery Segmentation for Stenosis Grading. - Cornelis M. van Bemmel; Luuk J. Spreeuwers; Max A. Viergever; Wiro J. Niessen (MICCAI (2), 2002)

Blood pool agent contrast-enhanced MRA: level-set-based artery-vein separation. - Cornelis M. van Bemmel; Luuk J. Spreeuwers; Bert Verdonck; Max A. Viergever; Wiro J. Niessen (Image Processing, 2002)

Active-shape-model-based segmentation of abdominal aortic aneurysms in CTA images. - Marleen de Bruijne; Bram van Ginneken; Wiro J. Niessen; J. B. Antoine Maintz; Max A. Viergever (Image Processing, 2002)

Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation. - Erik Meijering; Wiro J. Niessen; Joachim Weickert; Max A. Viergever (Medical Image Anal., 2002)

Automatic Construction of Multiple-object Three-dimensional Statistical Shape Models: Application to Cardiac Modelling. - Alejandro F. Frangi; Daniel Rueckert; Julia A. Schnabel; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2002)

Rigid registration of 3D ultrasound data of brain tumours. - Marloes M. J. Letteboer; Max A. Viergever; Wiro J. Niessen (CARS, 2003)

3D coronary reconstruction from calibrated motion-compensated 2D projections. - Babak Movassaghi; Volker Rasche; Raoul Florent; Max A. Viergever; Wiro J. Niessen (CARS, 2003)

Non-ECG gated 3D-rotational coronary angiography. - Babak Movassaghi; Volker Rasche; Max A. Viergever; Wiro J. Niessen (CARS, 2003)

Evaluation of Hessian-based filters to enhance the axis of coronary arteries in CT images. - Sílvia Delgado Olabarriaga; Wiro J. Niessen; Marcel Breeuwer (CARS, 2003)

Automatic Construction of Biventricular Statistical Shape Models. - Alejandro F. Frangi; Daniel Rueckert; Julia A. Schnabel; Wiro J. Niessen (FIMH, 2003)

Adapting Active Shape Models for 3D Segmentation of Tubular Structures in Medical Images. - Marleen de Bruijne; Bram van Ginneken; Max A. Viergever; Wiro J. Niessen (IPMI, 2003)

Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images. - Marleen de Bruijne; Bram van Ginneken; Lambertus W. Bartels; Maarten J. van der Laan; Jan D. Blankensteijn; Wiro J. Niessen; Max A. Viergever (MICCAI (2), 2003)

Automated Segmentation of the Left Ventricle in Cardiac MRI. - Michael Kaus; Jens von Berg; Wiro J. Niessen; Vladimir Pekar (MICCAI (1), 2003)

Non-rigid Registration of 3D Ultrasound Images of Brain Tumours Acquired during Neurosurgery. - Marloes M. J. Letteboer; Peter W. A. Willems; Max A. Viergever; Wiro J. Niessen (MICCAI (2), 2003)

Minimum Cost Path Algorithm for Coronary Artery Central Axis Tracking in CT Images. - Sílvia Delgado Olabarriaga; Marcel Breeuwer; Wiro J. Niessen (MICCAI (2), 2003)

Three-dimensional guide wire visualization from 3DRA using monoplane fluoroscopic imaging. - Theo van Walsum; Shirley A. M. Baert; Wiro J. Niessen (Image-Guided Procedures, 2003)

Model-based segmentation of abdominal aortic aneurysms in CTA images. - Marleen de Bruijne; Bram van Ginneken; Wiro J. Niessen; Marco Loog; Max A. Viergever (Image Processing, 2003)

Noninvasive MR to 3D Rotational x-ray registration of vetebral bodies. - Everine Brenda van de Kraats; Theo van Walsum; Jorrit-Jan Verlaan; Wiro J. Niessen (Image Processing, 2003)

Coupled deformable models with spatially varying features for quantitative assessment of left ventricular function from cardiac MRI. - Kirsten Meetz; Jens von Berg; Thomas Netsch; Vladimir Pekar; Steven Lobregt; Roel Truyen; Miriam Siers; Wiro J. Niessen; Michael R. Kaus (Image Processing, 2003)

3D Guide Wire Reconstruction from Biplane Image Sequence for Integrated Display fin 3D Vasculature. - Shirley A. M. Baert; Everine B. van de Kraats; Theo van Walsum; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2003)

Guide Wire Tracking During Endovascular Interventions. - Shirley A. M. Baert; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2003)

Level-Set Based Artery-Vein Separation in Blood Pool Agent CE-MR Angiograms. - Cornelis M. van Bemmel; Luuk J. Spreeuwers; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2003)

Blood Pool Contrast Enhanced MRA: Improved Arterial Visualization in the Steady State. - Cornelis M. van Bemmel; Onno Wink; Bert Verdonck; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2003)

Localization and Segmentation of Aortic Endografts using Marker Detection. - Marleen de Bruijne; Wiro J. Niessen; J. B. Antoine Maintz; Max A. Viergever (IEEE Trans. Medical Imaging, 2003)

Growth and Motion in Three-Dimensional Images. - Jon Sporring; Wiro J. Niessen; Joachim Weickert (IEEE Trans. Medical Imaging, 2003)

Automatic cardiac region-of-interest computation in cine 3D structural MRI. - Chris A. Cocosco; Thomas Netsch; Julien Sénégas; Daniel Bystrov; Wiro J. Niessen; Max A. Viergever (CARS, 2004)

Segmentation of Abdominal Aortic Aneurysms with a Non-parametric Appearance Model. - Sílvia Delgado Olabarriaga; Marcel Breeuwer; Wiro J. Niessen (ECCV Workshops CVAMIA and MMBIA, 2004)

Three-Dimensional Reconstruction of Tracked Freehand Ultrasound Using Non-Rigid Registration. - Graeme P. Penney; Krista Joosten; Marloes M. J. Letteboer; Max A. Viergever; Wiro J. Niessen (ISBI, 2004)

Precalibration Versus 2D-3D Registration for 3D Guide Wire Display in Endovascular Interventions. - Shirley A. M. Baert; Graeme P. Penney; Theo van Walsum; Wiro J. Niessen (MICCAI (2), 2004)

Standardized Evaluation of 2D-3D Registration. - Everine B. van de Kraats; Graeme P. Penney; Dejan Tomazevic; Theo van Walsum; Wiro J. Niessen (MICCAI (1), 2004)

Local Speed Functions in Level Set Based Vessel Segmentation. - Rashindra Manniesing; Wiro J. Niessen (MICCAI (1), 2004)

Multi-scale Statistical Grey Value Modelling for Thrombus Segmentation from CTA. - Sílvia Delgado Olabarriaga; Marcel Breeuwer; Wiro J. Niessen (MICCAI (1), 2004)

Registration-Based Interpolation Using a High-Resolution Image for Guidance. - Graeme P. Penney; Julia A. Schnabel; Daniel Rueckert; David J. Hawkes; Wiro J. Niessen (MICCAI (1), 2004)

Accuracy of Navigation on 3DRX Data Acquired with a Mobile Propeller C-Arm. - Theo van Walsum; Everine B. van de Kraats; Bart Carelsen; Sjirk N. Boon; Niels J. Noordhoek; Wiro J. Niessen (MICCAI (2), 2004)

3D guide wire tracking for navigation in endovascular interventions. - Shirley A. M. Baert; Theo van Walsum; Wiro J. Niessen (Image-Guided Procedures, 2004)

Semi-automatic segmentation and quantification of the internal carotid artery from 3D contrast-enhanced MR angiograms. - Cornelis M. van Bemmel; Wiro J. Niessen (Image Processing, 2004)

Skeletonization for reinitialization in level-set-based vascular tree segmentation. - Rashindra Manniesing; Birgitta K. Velthuis; Maarten S. van Leeuwen; Wiro J. Niessen (Image Processing, 2004)

3D coronary reconstruction from calibrated motion-compensated 2D projections based on semi-automated feature point detection. - Babak Movassaghi; Volker Rasche; Max A. Viergever; Wiro J. Niessen (Image Processing, 2004)

Accurate coronary modeling procedure using 2D calibrated projections based on 2D centerline points on a single projection. - Babak Movassaghi; Volker Rasche; Max A. Viergever; Wiro J. Niessen (Image Processing, 2004)

Construction and evaluation of an average CT brain image for inter-subject registration. - Cynthia Jongen; Josien P. W. Pluim; Paul H. J. Nederkoorn; Max A. Viergever; Wiro J. Niessen (Comput. Biol. Medicine, 2004)

Interactive segmentation of abdominal aortic aneurysms in CTA images. - Marleen de Bruijne; Bram van Ginneken; Max A. Viergever; Wiro J. Niessen (Medical Image Anal., 2004)

Automated segmentation of the left ventricle in cardiac MRI. - Michael Kaus; Jens von Berg; Jürgen Weese; Wiro J. Niessen; Vladimir Pekar (Medical Image Anal., 2004)

A quantitative analysis of 3-D coronary modeling from two or more projection images. - Babak Movassaghi; Volker Rasche; Michael Grass 001; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2004)

Registration-based interpolation. - Graeme P. Penney; Julia A. Schnabel; Daniel Rueckert; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2004)

Multiscale vessel tracking. - Onno Wink; Wiro J. Niessen; Max A. Viergever (IEEE Trans. Medical Imaging, 2004)

Multiscale Vessel Enhancing Diffusion in CT Angiography Noise Filtering. - Rashindra Manniesing; Wiro J. Niessen (IPMI, 2005)

Multispectral MR to X-Ray Registration of Vertebral Bodies by Generating CT-Like Data. - Everine B. van de Kraats; Graeme P. Penney; Theo van Walsum; Wiro J. Niessen (MICCAI (2), 2005)

Brain shift estimation in image-guided neurosurgery using 3-D ultrasound. - Marloes Maria Johanna Letteboer; Peter W. A. Willems; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Biomed. Eng., 2005)

Standardized evaluation methodology for 2-D-3-D registration. - Everine B. van de Kraats; Graeme P. Penney; Dejan Tomazevic; Theo van Walsum; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2005)

Segmentation of thrombus in abdominal aortic aneurysms from CTA with nonparametric statistical grey level appearance modeling. - Sílvia Delgado Olabarriaga; Jean-Michel Rouet; Maxim Fradkin; Marcel Breeuwer; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2005)

Guide wire reconstruction and visualization in 3DRA using monoplane fluoroscopic imaging. - Theo van Walsum; Shirley A. M. Baert; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2005)

Quantification of heterogeneity in dynamic contrast enhanced MRI data for tumor treatment assessment. - Lejla Alic; Jifke F. Veenland; Marion van Vliet; C. F. van Dijke; A. M. M. Eggermont; Wiro J. Niessen (ISBI, 2006)

Shape constrained vessel centerline extraction by integrating surface evolution and topology analysis. - Rashindra Manniesing; Wiro J. Niessen (ISBI, 2006)

Bayesian tracking for fluorescence microscopic imaging. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2006)

Automatic cardiac MRI myocardium segmentation using graphcut. - Gunnar Kedenburg; Chris A. Cocosco; Ullrich Köthe; Wiro J. Niessen; Evert-Jan Vonken; Max A. Viergever (Image Processing, 2006)

kNN-based multi-spectral MRI brain tissue classification: manual training versus automated atlas-based training. - Henri A. Vrooman; Chris A. Cocosco; Rik Stokking; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (Image Processing, 2006)

Accuracy evaluation of direct navigation with an isocentric 3D rotational X-ray system. - Everine B. van de Kraats; Theo van Walsum; Lance Kendrick; Niels J. Noordhoek; Wiro J. Niessen (Medical Image Anal., 2006)

Level set based cerebral vasculature segmentation and diameter quantification in CT angiography. - Rashindra Manniesing; Birgitta K. Velthuis; Maarten S. van Leeuwen; Irene C. van der Schaaf; Peter Jan van Laar; Wiro J. Niessen (Medical Image Anal., 2006)

Vessel enhancing diffusion: A scale space representation of vessel structures. - Rashindra Manniesing; Max A. Viergever; Wiro J. Niessen (Medical Image Anal., 2006)

Quantitative Evaluation of Three Calibration Methods for 3-D Freehand Ultrasound. - François Rousseau 002; Pierre Hellier; Marloes M. J. Letteboer; Wiro J. Niessen; Christian Barillot (IEEE Trans. Medical Imaging, 2006)

Bayesian Tracking of Elongated Structures in 3D Images. - Michiel Schaap; Ihor Smal; Coert Metz; Theo van Walsum; Wiro J. Niessen (IPMI, 2007)

Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. - Ihor Smal; Katharina Draegestein; Niels Galjart; Wiro J. Niessen; Erik Meijering (IPMI, 2007)

Automatic Segmentation of Brain Tissue Andwhitematter Lesions in MRI. - Renske de Boer; Fedde van der Lijn; Henri A. Vrooman; Meike W. Vernooij; Mohammad Arfan Ikram; Monique M. B. Breteler; Wiro J. Niessen (ISBI, 2007)

A Variational Model for Level-set Based Cell Tracking in Time-lapse Fluorescence Microscopy Images. - Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2007)

Semi-Automatic Coronary Artery Centerline Extraction in Computed Tomography Angiography Data. - Coert Metz; Michiel Schaap; Alina G. van der Giessen; Theo van Walsum; Wiro J. Niessen (ISBI, 2007)

3d X-Ray Image Guidance in Interventional Radiology. - Wiro J. Niessen; Everine B. van de Kraats; Shirley A. M. Baert; Theo van Walsum (ISBI, 2007)

Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2007)

Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA. - Michiel Schaap; Rashindra Manniesing; Ihor Smal; Theo van Walsum; Aad van der Lugt; Wiro J. Niessen (MICCAI (2), 2007)

Automated localization of periventricular and subcortical white matter lesions. - Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Henri A. Vrooman; Daniel Rueckert; Alexander Hammers; Monique M. B. Breteler; Wiro J. Niessen (Image Processing, 2007)

Automatic segmentation of the internal carotid arteries through the skull base. - Rashindra Manniesing; Wiro J. Niessen (Image Processing, 2007)

Multi-spectral brain tissue segmentation using automatically trained k-Nearest-Neighbor classification. - Henri A. Vrooman; Chris A. Cocosco; Fedde van der Lijn; Rik Stokking; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2007)

Modeling Friction, Intrinsic Curvature, and Rotation of Guide Wires for Simulation of Minimally Invasive Vascular Interventions. - Tanja Alderliesten; Maurits K. Konings; Wiro J. Niessen (IEEE Trans. Biomed. Eng., 2007)

Towards a Real-Time Minimally-Invasive Vascular Intervention Simulation System. - Tanja Alderliesten; Peter A. N. Bosman; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2007)

Vessel Axis Tracking Using Topology Constrained Surface Evolution. - Rashindra Manniesing; Max A. Viergever; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2007)

Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. - Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2008)

A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2008)

Averaging Centerlines: Mean Shift on Paths. - Theo van Walsum; Michiel Schaap; Coert Metz; Alina G. van der Giessen; Wiro J. Niessen (MICCAI (1), 2008)

Volume preserving image registration via a post-processing stage. - Reinhard Hameeteman; Jifke F. Veenland; Wiro J. Niessen (Image Processing, 2008)

AdaBoost classification for model-based segmentation of the outer wall of the common carotid artery in CTA. - Danijela Vukadinovic; Theo van Walsum; Rashindra Manniesing; Aad van der Lugt; Thomas de Weert; Wiro J. Niessen (Image Processing, 2008)

Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. - Ihor Smal; Erik Meijering; Katharina Draegestein; Niels Galjart; Ilya Grigoriev; Anna Akhmanova; M. E. van Royen; Adriaan B. Houtsmuller; Wiro J. Niessen (Medical Image Anal., 2008)

Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts. - Fedde van der Lijn; Tom den Heijer; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2008)

White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging. - Meike W. Vernooij; Marius de Groot; Aad van der Lugt; Mohammad Arfan Ikram; Gabriel P. Krestin; Albert Hofman; Wiro J. Niessen; Monique M. B. Breteler (NeuroImage, 2008)

Fast Noise Reduction in Computed Tomography for Improved 3-D Visualization. - Michiel Schaap; Arnold M. R. Schilham; Karel J. Zuiderveld; Mathias Prokop; Evert-Jan Vonken; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2008)

Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. - Ihor Smal; Katharina Draegestein; Niels Galjart; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2008)

Coronary Lumen Segmentation Using Graph Cuts and Robust Kernel Regression. - Michiel Schaap; Lisan Neefjes; Coert Metz; Alina G. van der Giessen; Annick C. Weustink; Nico Mollet; Jolanda J. Wentzel; Theo van Walsum; Wiro J. Niessen (IPMI, 2009)

Energy Minimization Methods for Cell Motion Correction and Intracellular Analysis in Live-Cell Fluorescence Microscopy. - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (ISBI, 2009)

Integrating Biological Knowledge, Novel Imaging Modalities, and Modeling in Breast Cancer Diagnosis. - Nico Karssemeijer; Henkjan J. Huisman; David J. Hawkes; John H. Hipwell; Tobias Böhler; Jan M. Lesniak; Christine Tanner; Gábor Székely; Wiro J. Niessen; Horst K. Hahn (ISBI, 2009)

Cerebellum Segmentation in MRI Using Atlas Registration and Local Multi-Scale Image Descriptors. - Fedde van der Lijn; Marleen de Bruijne; Yoo Young Hoogendam; Stefan Klein 001; Reinhard Hameeteman; Monique M. B. Breteler; Wiro J. Niessen (ISBI, 2009)

GPU Accelerated Alignment of 3-D CTA with 2-D X-Ray Data for Improved Guidance in Coronary Interventions. - Coert Metz; Michiel Schaap; Stefan Klein 001; Annick C. Weustink; Nico Mollet; Carl J. Schultz; Robert Jan van Geuns; Patrick W. Serruys; Theo van Walsum; Wiro J. Niessen (ISBI, 2009)

Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. - Ihor Smal; Marco Loog; Wiro J. Niessen; Erik Meijering (ISBI, 2009)

Carotid Artery Segmentation and Plaque Quantification in CTA. - Danijela Vukadinovic; Theo van Walsum; Sietske Rozie; Thomas de Weert; Rashindra Manniesing; Aad van der Lugt; Wiro J. Niessen (ISBI, 2009)

Iterative Co-linearity Filtering and Parameterization of Fiber Tracts in the Entire Cingulum. - Marius de Groot; Meike W. Vernooij; Stefan Klein 001; Alexander Leemans; Renske de Boer; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (MICCAI (1), 2009)

Patient Specific 4D Coronary Models from ECG-gated CTA Data for Intra-operative Dynamic Alignment of CTA with X-ray Images. - Coert Metz; Michiel Schaap; Stefan Klein 001; Lisan Neefjes; Ermanno Capuano; Carl J. Schultz; Robert Jan van Geuns; Patrick W. Serruys; Theo van Walsum; Wiro J. Niessen (MICCAI (1), 2009)

Editorial. - Mads Nielsen; Wiro J. Niessen; Carl-Fredrik Westin (Int. J. Comput. Vis., 2009)

Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. - Michiel Schaap; Coert Metz; Theo van Walsum; Alina G. van der Giessen; Annick C. Weustink; Nico Mollet; Christian Bauer 001; Hrvoje Bogunovic; Carlos Castro-Gonzalez; Xiang Deng; Engin Dikici; Thomas O'Donnell; et al. (Medical Image Anal., 2009)

White matter lesion extension to automatic brain tissue segmentation on MRI. - Renske de Boer; Henri A. Vrooman; Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2009)

Selective Deblurring for Improved Calcification Visualization and Quantification in Carotid CT Angiography: Validation Using Micro-CT. - Empar Rollano-Hijarrubia; Rashindra Manniesing; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2009)

Confidence of model based shape reconstruction from sparse data. - Nora Baka; Marleen de Bruijne; Johan H. C. Reiber; Wiro J. Niessen; Boudewijn P. F. Lelieveldt (ISBI, 2010)

Automated carotid artery distensibility measurements from CTA using nonrigid registration. - Reinhard Hameeteman; Sietske Rozie; Coert Metz; Stefan Klein 001; Theo van Walsum; Aad van der Lugt; Wiro J. Niessen (ISBI, 2010)

Early diagnosis of dementia based on intersubject whole-brain dissimilarities. - Stefan Klein 001; Marco Loog; Fedde van der Lijn; Tom den Heijer; Alexander Hammers; Marleen de Bruijne; Aad van der Lugt; Robert P. W. Duin; Monique M. B. Breteler; Wiro J. Niessen (ISBI, 2010)

A patient-specific coronary density estimate. - Rahil Khurram Shahzad; Michiel Schaap; Theo van Walsum; Stefan Klein 001; Annick C. Weustink; Lucas J. van Vliet; Wiro J. Niessen (ISBI, 2010)

Particle filtering methods for motion analysis in tagged MRI. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2010)

Coronary artery motion modeling from 3D cardiac CT sequences using template matching and graph search. - Dong Ping Zhang; Laurent Risser; Coert Metz; Lisan Neefjes; Nico Mollet; Wiro J. Niessen; Daniel Rueckert (ISBI, 2010)

Coronary Motion Estimation from CTA Using Probability Atlas and Diffeomorphic Registration. - Dong Ping Zhang; Laurent Risser; François-Xavier Vialard; Philip J. Edwards; Coert Metz; Lisan Neefjes; Nico Mollet; Wiro J. Niessen; Daniel Rueckert (MIAR, 2010)

Prediction of Dementia by Hippocampal Shape Analysis. - Hakim C. Achterberg; Fedde van der Lijn; Tom den Heijer; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen; Marleen de Bruijne (MLMI, 2010)

Correspondence free 3D statistical shape model fitting to sparse x-ray projections. - Nora Baka; Wiro J. Niessen; Bart L. Kaptein; Theo van Walsum; Luca Ferrarini; Johan H. C. Reiber; Boudewijn P. F. Lelieveldt (Image Processing, 2010)

Intracranial aneurysm segmentation in 3D CT angiography: method and quantitative validation. - Azadeh Firouzian; Rashindra Manniesing; Zwenneke H. Flach; Roelof Risselada; Fop van Kooten; Miriam C. J. M. Sturkenboom; Aad van der Lugt; Wiro J. Niessen (Image Processing, 2010)

Fully automatic cardiac segmentation from 3D CTA data: a multi-atlas based approach. - Hortense A. Kirisli; Michiel Schaap; Stefan Klein 001; Lisan Neefjes; Annick C. Weustink; Theo van Walsum; Wiro J. Niessen (Image Processing, 2010)

Nonrigid Registration and Template Matching for Coronary Motion Modeling from 4D CTA. - Dong Ping Zhang; Laurent Risser; Ola Friman; Coert Metz; Lisan Neefjes; Nico Mollet; Wiro J. Niessen; Daniel Rueckert (WBIR, 2010)

Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. - Oleh Dzyubachyk; Jeroen Essers; Wiggert A. van Cappellen; Céline Baldeyron; Akiko Inagaki; Wiro J. Niessen; Erik Meijering (Bioinform., 2010)

Motion compensated iterative reconstruction of a region of interest in cardiac cone-beam CT. - Alfonso A. Isola; A. Ziegler; Dirk Schäfer 001; Thomas Köhler 003; Wiro J. Niessen; Michael Grass 001 (Comput. Medical Imaging Graph., 2010)

Robust CTA lumen segmentation of the atherosclerotic carotid artery bifurcation in a large patient population. - Rashindra Manniesing; Michiel Schaap; Sietske Rozie; Reinhard Hameeteman; Danijela Vukadinovic; Aad van der Lugt; Wiro J. Niessen (Medical Image Anal., 2010)

Accuracy and reproducibility study of automatic MRI brain tissue segmentation methods. - Renske de Boer; Henri A. Vrooman; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Aad van der Lugt; Wiro J. Niessen (NeuroImage, 2010)

Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. - Ihor Smal; Ilya Grigoriev; Anna Akhmanova; Wiro J. Niessen; Erik Meijering (IEEE Trans. Image Process., 2010)

Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy. - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Correction to "Advanced Level-Set-Based Cell Tracking in Time-Lapse Fluorescence Microscopy". - Oleh Dzyubachyk; Wiggert A. van Cappellen; Jeroen Essers; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. - Ihor Smal; Marco Loog; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Segmentation of the Outer Vessel Wall of the Common Carotid Artery in CTA. - Danijela Vukadinovic; Theo van Walsum; Rashindra Manniesing; Sietske Rozie; Reinhard Hameeteman; Thomas de Weert; Aad van der Lugt; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2010)

Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. - Noemí Carranza-Herrezuelo; Ihor Smal; Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2011)

Quantitative comparison of tracking methods for motion analysis in tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Wiro J. Niessen; Erik Meijering (ISBI, 2011)

Plaque characterization in ex vivo MRI evaluated by dense 3D correspondence with histology. - Arna van Engelen; Marleen de Bruijne; Stefan Klein 001; Hence J. M. Verhagen; Harald C. Groen; Jolanda J. Wentzel; Aad van der Lugt; Wiro J. Niessen (Computer-Aided Diagnosis, 2011)

Comparison of Shape Regression Methods under Landmark Position Uncertainty. - Nora Baka; Coert Metz; Michiel Schaap; Boudewijn P. F. Lelieveldt; Wiro J. Niessen; Marleen de Bruijne (MICCAI (2), 2011)

Semi-automated Subcutaneous and Visceral Adipose Tissue Quantification in Computed Tomography. - Marcel Koek; Frederico Bastos Goncalves; Don Poldermans; Wiro J. Niessen; Rashindra Manniesing (Abdominal Imaging, 2011)

Alignment of 4D Coronary CTA with Monoplane X-ray Angiography. - Coert Metz; Michiel Schaap; Stefan Klein 001; Peter R. Rijnbeek; Lisan Neefjes; Nico Mollet; Carl J. Schultz; Patrick W. Serruys; Wiro J. Niessen; Theo van Walsum (AE-CAI, 2011)

Improved Tissue Segmentation by Including an MR Acquisition Model. - Dirk H. J. Poot; Marleen de Bruijne; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen (MBIA, 2011)

Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Wiro J. Niessen; Erik Meijering (MICCAI (1), 2011)

A patient-specific visualization tool for comprehensive analysis of coronary CTA and perfusion MRI data. - Hortense A. Kirisli; V. Gupta; Sharon W. Kirschbaum; Lisan Neefjes; Robert Jan van Geuns; Nico Mollet; Boudewijn P. F. Lelieveldt; Johan H. C. Reiber; Theo van Walsum; Wiro J. Niessen (Image-Guided Procedures, 2011)

Multispectral MRI centerline tracking in carotid arteries. - Hui Tang; Theo van Walsum; Robbert S. van Onkelen; Stefan Klein 001; Reinhard Hameeteman; Michiel Schaap; Quirijn J. A. van den Bouwhuijsen; Jacqueline C. M. Witteman; Aad van der Lugt; Lucas J. van Vliet; Wiro J. Niessen (Image Processing, 2011)

Region based level set segmentation of the outer wall of the carotid bifurcation in CTA. - Danijela Vukadinovic; Theo van Walsum; Rashindra Manniesing; Sietske Rozie; Aad van der Lugt; Wiro J. Niessen (Image Processing, 2011)

2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models. - Nora Baka; Bart L. Kaptein; Marleen de Bruijne; Theo van Walsum; J. E. Giphart; Wiro J. Niessen; Boudewijn P. F. Lelieveldt (Medical Image Anal., 2011)

Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading. - K. Hameeteman; Maria A. Zuluaga; Moti Freiman; Leo Joskowicz; Olivier Cuisenaire; Leonardo Floréz-Valencia; Mehmet Akif Gülsün; Karl Krissian; Julien Mille; Wilbur C. K. Wong; Maciej Orkisz; Hüseyin Tek; et al. (Medical Image Anal., 2011)

Nonrigid registration of dynamic medical imaging data using nD + t B-splines and a groupwise optimization approach. - Coert Metz; Stefan Klein 001; Michiel Schaap; Theo van Walsum; Wiro J. Niessen (Medical Image Anal., 2011)

Statistical analysis of minimum cost path based structural brain connectivity. - Renske de Boer; Michiel Schaap; Fedde van der Lijn; Henri A. Vrooman; Marius de Groot; Aad van der Lugt; Mohammad Arfan Ikram; Meike W. Vernooij; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2011)

Robust Shape Regression for Supervised Vessel Segmentation and its Application to Coronary Segmentation in CTA. - Michiel Schaap; Theo van Walsum; Lisan Neefjes; Coert Metz; Ermanno Capuano; Marleen de Bruijne; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2011)

3D LBP-Based Rotationally Invariant Region Description. - Jyotirmoy Banerjee; Adriaan Moelker; Wiro J. Niessen; Theo van Walsum (ACCV Workshops (1), 2012)

Quantification of DCE-MRI: A validation of three techniques with 3D-histology. - Karin Bol; Joost C. Haeck; Lejla Alic; Wiro J. Niessen; Marion de Jong; Monique Bernsen; Jifke F. Veenland (ISBI, 2012)

Supervised in-vivo plaque characterization incorporating class label uncertainty. - Arna van Engelen; Wiro J. Niessen; Stefan Klein 001; Harald C. Groen; Hence J. M. Verhagen; Jolanda J. Wentzel; Aad van der Lugt; Marleen de Bruijne (ISBI, 2012)

Hyperthermia critical tissues automatic segmentation of head and neck CT images using atlas registration and graph cuts. - Valerio Fortunati; René F. Verhaart; Fedde van der Lijn; Wiro J. Niessen; Jifke F. Veenland; Maarten M. Paulides; Theo van Walsum (ISBI, 2012)

A computer aided detection system for cerebral microbleeds in brain MRI. - Babak Ghafaryasl; Fedde van der Lijn; Marielle Poels; Henri A. Vrooman; Mohammad Arfan Ikram; Wiro J. Niessen; Aad van der Lugt; Meike W. Vernooij; Marleen de Bruijne (ISBI, 2012)

Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. - Artem Khmelinskii; Esben Plenge; Peter Kok; Oleh Dzyubachyk; Dirk H. J. Poot; E. Suidgeest; Charl P. Botha; Wiro J. Niessen; Louise van der Weerd; Erik Meijering; Boudewijn P. F. Lelieveldt (ISBI, 2012)

Quantitative imaging biomarkers in neurologic disease: Population study perspective. - Wiro J. Niessen; Henri A. Vrooman; Renske de Boer; Fedde van der Lijn; Hakim C. Achterberg; Marcel Koek; Stefan Klein 001; Aad van der Lugt; Marleen de Bruijne; Mohammad Arfan Ikram; Meike W. Vernooij (ISBI, 2012)

Automatic detection of calcified lesions in the descending aorta using contrast enhanced CT scans. - Rahil Khurram Shahzad; Michiel Schaap; Frederico Bastos Goncalves; Coert Metz; Hui Tang; Theo van Walsum; Adriaan Moelker; Lucas J. van Vliet; Wiro J. Niessen (ISBI, 2012)

Lumen segmentation of atherosclerotic carotid arteries in CTA. - Hui Tang; Theo van Walsum; Reinhard Hameeteman; Michiel Schaap; Aad van der Lugt; Lucas J. van Vliet; Wiro J. Niessen (ISBI, 2012)

Carotid Artery Wall Segmentation by Coupled Surface Graph Cuts. - Andres Arias; Jens Petersen; Arna van Engelen; Hui Tang; Mariana Selwaness; Jacqueline C. M. Witteman; Aad van der Lugt; Wiro J. Niessen; Marleen de Bruijne (MCV, 2012)

Robust Motion Correction in the Frequency Domain of Cardiac MR Stress Perfusion Sequences. - Vikas Gupta; Martijn van de Giessen; Hortense A. Kirisli; Sharon W. Kirschbaum; Wiro J. Niessen; Boudewijn P. F. Lelieveldt (MICCAI (1), 2012)

Evaluation of Diffusion Filters for 3D CTA Liver Vessel Enhancement. - Ha Manh Luu; Adriaan Moelker; Camiel Klink; Adriënne Mendrik; Wiro J. Niessen; Theo van Walsum (Abdominal Imaging, 2012)

Intracranial aneurysm growth quantification in CTA. - Azadeh Firouzian; Rashindra Manniesing; Coert T. Metz; Stefan Klein 001; Birgitta K. Velthuis; Gabriel J. E. Rinkel; Aad van der Lugt; Wiro J. Niessen (Image Processing, 2012)

Super-resolution in MRI: better images faster? - Esben Plenge; Dirk H. J. Poot; Monique Bernsen; Gyula Kotek; Gavin Houston; Piotr Wielopolski; Louise van der Weerd; Wiro J. Niessen; Erik Meijering (Image Processing, 2012)

Registration of Free-Hand Ultrasound and MRI of Carotid Arteries through Combination of Point-Based and Intensity-Based Algorithms. - Diego D. B. Carvalho; Stefan Klein 001; Zeynettin Akkus; Gerrit L. ten Kate; Hui Tang; Mariana Selwaness; Arend F. L. Schinkel; Johan G. Bosch; Aad van der Lugt; Wiro J. Niessen (WBIR, 2012)

Hierarchical vs. Simultaneous Multiresolution Strategies for Nonrigid Image Registration. - Wei Sun 014; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2012)

Estimating 3D lumen centerlines of carotid arteries in free-hand acquisition ultrasound. - Diego D. B. Carvalho; Stefan Klein 001; Zeynettin Akkus; Gerrit L. ten Kate; Arend F. L. Schinkel; Johan G. Bosch; Aad van der Lugt; Wiro J. Niessen (Int. J. Comput. Assist. Radiol. Surg., 2012)

Comprehensive visualization of multimodal cardiac imaging data for assessment of coronary artery disease: first clinical results of the SMARTVis tool. - Hortense A. Kirisli; Vikas Gupta; Sharon W. Kirschbaum; Alexia Rossi; Coert Metz; Michiel Schaap; Robert Jan van Geuns; Nico Mollet; Boudewijn P. F. Lelieveldt; Johan H. C. Reiber; Theo van Walsum; Wiro J. Niessen (Int. J. Comput. Assist. Radiol. Surg., 2012)

Cardiac motion-corrected iterative cone-beam CT reconstruction using a semi-automatic minimum cost path-based coronary centerline extraction. - Alfonso A. Isola; Coert Metz; Michiel Schaap; Stefan Klein 001; Michael Grass 001; Wiro J. Niessen (Comput. Medical Imaging Graph., 2012)

Cardiac MR perfusion image processing techniques: A survey. - Vikas Gupta; Hortense A. Kirisli; Emile A. Hendriks; Rob J. van der Geest; Martijn van de Giessen; Wiro J. Niessen; Johan H. C. Reiber; Boudewijn P. F. Lelieveldt (Medical Image Anal., 2012)

Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Piotr Wielopolski; Adriaan Moelker; Tirza Springeling; Monique Bernsen; Wiro J. Niessen; Erik Meijering (Medical Image Anal., 2012)

Semiautomatic carotid lumen segmentation for quantification of lumen geometry in multispectral MRI. - Hui Tang; Theo van Walsum; Robbert S. van Onkelen; Reinhard Hameeteman; Stefan Klein 001; Michiel Schaap; Fufa L. Tori; Quirijn J. A. van den Bouwhuijsen; Jacqueline C. M. Witteman; Aad van der Lugt; Lucas J. van Vliet; Wiro J. Niessen (Medical Image Anal., 2012)

Structural and diffusion MRI measures of the hippocampus and memory performance. - Tom den Heijer; Fedde van der Lijn; Meike W. Vernooij; Marius de Groot; P. J. Koudstaal; Aad van der Lugt; Gabriel P. Krestin; Albert Hofman; Wiro J. Niessen; Monique M. B. Breteler (NeuroImage, 2012)

Automated measurement of local white matter lesion volume. - Fedde van der Lijn; Benjamin F. J. Verhaaren; Mohammad Arfan Ikram; Stefan Klein 001; Marleen de Bruijne; Henri A. Vrooman; Meike W. Vernooij; Alexander Hammers; Daniel Rueckert; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (NeuroImage, 2012)

Statistical Shape Model-Based Femur Kinematics From Biplane Fluoroscopy. - Nora Baka; Marleen de Bruijne; Theo van Walsum; Bart L. Kaptein; J. E. Giphart; Michiel Schaap; Wiro J. Niessen; Boudewijn P. F. Lelieveldt (IEEE Trans. Medical Imaging, 2012)

Automated Brain Structure Segmentation Based on Atlas Registration and Appearance Models. - Fedde van der Lijn; Marleen de Bruijne; Stefan Klein 001; Tom den Heijer; Yoo Young Hoogendam; Aad van der Lugt; Monique M. B. Breteler; Wiro J. Niessen (IEEE Trans. Medical Imaging, 2012)

Regression-Based Cardiac Motion Prediction From Single-Phase CTA. - Coert Metz; Nora Baka; Hortense A. Kirisli; Michiel Schaap; Stefan Klein 001; Lisan Neefjes; Nico Mollet; Boudewijn P. F. Lelieveldt; Marleen de Bruijne; Wiro J. Niessen; Theo van Walsum (IEEE Trans. Medical Imaging, 2012)

Groupwise Registration for Correcting Subject Motion and Eddy Current Distortions in Diffusion MRI Using a PCA Based Dissimilarity Metric. - Wyke Huizinga; Coert T. Metz; Dirk H. J. Poot; Meike de Groot; Wiro J. Niessen; Alexander Leemans; Stefan Klein 001 (CDMRI/MMBC@MICCAI, 2013)

Carotid Artery Lumen Segmentation in 3D Free-Hand Ultrasound Images Using Surface Graph Cuts. - Andrés M. Arias Lorza; Diego D. B. Carvalho; Jens Petersen; Anouk C. van Dijk; Aad van der Lugt; Wiro J. Niessen; Stefan Klein 001; Marleen de Bruijne (MICCAI (2), 2013)

Super-Resolution Reconstruction Using Cross-Scale Self-similarity in Multi-slice MRI. - Esben Plenge; Dirk H. J. Poot; Wiro J. Niessen; Erik Meijering (MICCAI (3), 2013)

Local appearance features for robust MRI brain structure segmentation across scanning protocols. - Hakim C. Achterberg; Dirk H. J. Poot; Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Marleen de Bruijne (Image Processing, 2013)

Bias correction of maximum likelihood estimation in quantitative MRI. - Dirk H. J. Poot; Gyula Kotek; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2013)

PPF - A Parallel Particle Filtering Library. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

Special issue on Shape Modeling in Medical Image Analysis. - Wiro J. Niessen; Shuo Li 001; Song Wang 002 (Comput. Vis. Image Underst., 2013)

Statistical coronary motion models for 2D + t/3D registration of X-ray coronary angiography and CTA. - Nora Baka; Coert Metz; Carl J. Schultz; Lisan Neefjes; Robert Jan van Geuns; Boudewijn P. F. Lelieveldt; Wiro J. Niessen; Theo van Walsum; Marleen de Bruijne (Medical Image Anal., 2013)

Automatic carotid artery distensibility measurements from CTA using nonrigid registration. - K. Hameeteman; Sietske Rozie; Coert Metz; Rashindra Manniesing; Theo van Walsum; Aad van der Lugt; Wiro J. Niessen; Stefan Klein 001 (Medical Image Anal., 2013)

Standardized evaluation framework for evaluating coronary artery stenosis detection, stenosis quantification and lumen segmentation algorithms in computed tomography angiography. - Hortense A. Kirisli; Michiel Schaap; Coert Metz; A. S. Dharampal; W. B. Meijboom; S. L. Papadopoulou; A. Dedic; K. Nieman; Michiel A. de Graaf; M. F. L. Meijs; M. J. Cramer; Alexander Broersen; et al. (Medical Image Anal., 2013)

Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. - Marius de Groot; Meike W. Vernooij; Stefan Klein 001; Mohammad Arfan Ikram; Frans M. Vos; Stephen M. Smith 001; Wiro J. Niessen; Jesper L. R. Andersson (NeuroImage, 2013)

Simultaneous Multiresolution Strategies for Nonrigid Image Registration. - Wei Sun 014; Wiro J. Niessen; Marijn van Stralen; Stefan Klein 001 (IEEE Trans. Image Process., 2013)

Registration of 3D+t Coronary CTA and Monoplane 2D+t X-Ray Angiography. - Coert Metz; Michiel Schaap; Stefan Klein 001; Nora Baka; Lisan Neefjes; Carl J. Schultz; Wiro J. Niessen; Theo van Walsum (IEEE Trans. Medical Imaging, 2013)

An adaptive distributed resampling algorithm with non-proportional allocation. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (ICASSP, 2014)

2D/3D Catheter-Based Registration for Image Guidance in TACE of Liver Tumors. - Pierre Ambrosini; Danny Ruijters; Adriaan Moelker; Wiro J. Niessen; Theo van Walsum (IPCAI, 2014)

Semi-automated Quantification of Fibrous Cap Thickness in Intracoronary Optical Coherence Tomography. - Guillaume Zahnd; Antonios Karanasos; Gijs van Soest; Evelyn Regar; Wiro J. Niessen; Frank Gijsen; Theo van Walsum (IPCAI, 2014)

Fuzzy logic based detection of neuron bifurcations in microscopy images. - Miroslav Radojevic; Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2014)

Feature Selection Based on SVM Significance Maps for Classification of Dementia. - Esther Bron; Marion Smits; John van Swieten; Wiro J. Niessen; Stefan Klein 001 (MLMI, 2014)

Free-Form Deformation Using Lower-Order B-spline for Nonrigid Image Registration. - Wei Sun 014; Wiro J. Niessen; Stefan Klein 001 (MICCAI (1), 2014)

Nonrigid motion compensation in B-mode and contrast enhanced ultrasound image sequences of the carotid artery. - Diego D. B. Carvalho; Zeynettin Akkus; Johan G. Bosch; Stijn C. H. van den Oord; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2014)

Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen. - Jean-Marie Guyader; Livia Bernardin; Naomi H. M. Douglas; Dirk H. J. Poot; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2014)

Wavelet based free-form deformations for nonrigid registration. - Wei Sun 014; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2014)

4D Liver Ultrasound Registration. - Jyotirmoy Banerjee; Camiel Klink; Edward D. Peters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (WBIR, 2014)

Non-rigid Groupwise Image Registration for Motion Compensation in Quantitative MRI. - Wyke Huizinga; Dirk H. J. Poot; Jean-Marie Guyader; Henk Smit; Matthijs van Kranenburg; Robert Jan van Geuns; André Uitterdijk; Heleen M. M. van Beusekom; Bram F. Coolen; Alexander Leemans; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2014)

Randomly Perturbed Free-Form Deformation for Nonrigid Image Registration. - Wei Sun 014; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2014)

Oriented Gaussian Mixture Models for Nonrigid 2D/3D Coronary Artery Registration. - Nora Baka; Coert Metz; Carl J. Schultz; Robert Jan van Geuns; Wiro J. Niessen; Theo van Walsum (IEEE Trans. Medical Imaging, 2014)

CSF contamination-invariant statistics in diffusion-weighted MRI. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Meike de Groot; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2015)

Groupwise image registration of multimodal head-and-neck images. - Jean-Marie Guyader; Wyke Huizinga; Valerio Fortunati; Jifke F. Veenland; Margarethus M. Paulides; Wiro J. Niessen; Stefan Klein 001 (ISBI, 2015)

3D Catheter Tip Tracking in 2D X-Ray Image Sequences Using a Hidden Markov Model and 3D Rotational Angiography. - Pierre Ambrosini; Ihor Smal; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (AE-CAI, 2015)

Layer Separation for Vessel Enhancement in Interventional X-ray Angiograms Using Morphological Filtering and Robust PCA. - Hua Ma 001; Gerardo Dibildox; Jyotirmoy Banerjee; Wiro J. Niessen; Carl J. Schultz; Evelyn Regar; Theo van Walsum (AE-CAI, 2015)

Continuous roadmapping in liver TACE procedures using 2D-3D catheter-based registration. - Pierre Ambrosini; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2015)

Semi-automatic MRI segmentation and volume quantification of intra-plaque hemorrhage. - Hui Tang; Mariana Selwaness; Reinhard Hameeteman; Anouk C. van Dijk; Aad van der Lugt; Jacqueline C. M. Witteman; Wiro J. Niessen; Lucas J. van Vliet; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2015)

Quantification of fibrous cap thickness in intracoronary optical coherence tomography with a contour segmentation method based on dynamic programming. - Guillaume Zahnd; Antonios Karanasos; Gijs van Soest; Evelyn Regar; Wiro J. Niessen; Frank Gijsen; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2015)

XNAT imaging platform for BioMedBridges and CTMM TraIT. - Stefan Klein 001; Erwin Vast; Johan van Soest; Andre Dekker; Marcel Koek; Wiro J. Niessen (J. Clin. Bioinform., 2015)

Fast and robust 3D ultrasound registration - Block and game theoretic matching. - Jyotirmoy Banerjee; Camiel Klink; Edward D. Peters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (Medical Image Anal., 2015)

IT Infrastructure to Support the Secondary Use of Routinely Acquired Clinical Imaging Data for Research. - Kai Yan Eugene Leung; Fedde van der Lijn; Henri A. Vrooman; Miriam C. J. M. Sturkenboom; Wiro J. Niessen (Neuroinformatics, 2015)

Feature Selection Based on the SVM Weight Vector for Classification of Dementia. - Esther E. Bron; Marion Smits; Wiro J. Niessen; Stefan Klein 001 (IEEE J. Biomed. Health Informatics, 2015)

Lumen Segmentation and Motion Estimation in B-Mode and Contrast-Enhanced Ultrasound Images of the Carotid Artery in Patients With Atherosclerotic Plaque. - Diego D. B. Carvalho; Zeynettin Akkus; Stijn C. H. van den Oord; Arend F. L. Schinkel; Antonius F. W. van der Steen; Wiro J. Niessen; Johan G. Bosch; Stefan Klein 001 (IEEE Trans. Medical Imaging, 2015)

Multi-Center MRI Carotid Plaque Component Segmentation Using Feature Normalization and Transfer Learning. - Arna van Engelen; Anouk C. van Dijk; Martine T. B. Truijman; Ronald van't Klooster; Annegreet van Opbroek; Aad van der Lugt; Wiro J. Niessen; M. Eline Kooi; Marleen de Bruijne (IEEE Trans. Medical Imaging, 2015)

Total Correlation-Based Groupwise Image Registration for Quantitative MRI. - Jean-Marie Guyader; Wyke Huizinga; Valerio Fortunati; Dirk H. J. Poot; Matthijs van Kranenburg; Jifke F. Veenland; Margarethus M. Paulides; Wiro J. Niessen; Stefan Klein 001 (CVPR Workshops, 2016)

Modeling the brain morphology distribution in the general aging population. - Wyke Huizinga; Dirk H. J. Poot; Gennady V. Roshchupkin; Esther E. Bron; Mohammad Arfan Ikram; Meike W. Vernooij; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Fusion of fibrous cap thickness and wall shear stress to assess plaque vulnerability in coronary arteries: a pilot study. - Guillaume Zahnd; Jelle Schrauwen; Antonios Karanasos; Evelyn Regar; Wiro J. Niessen; Theo van Walsum; Frank Gijsen (Int. J. Comput. Assist. Radiol. Surg., 2016)

Fastr: A Workflow Engine for Advanced Data Flows in Medical Image Analysis. - Hakim C. Achterberg; Marcel Koek; Wiro J. Niessen (Frontiers ICT, 2016)

User Interaction in Semi-Automatic Segmentation of Organs at Risk: a Case Study in Radiotherapy. - Anjana Ramkumar; Jose Dolz; Hortense A. Kirisli; Sonja Adebahr; Tanja Schimek-Jasch; Ursula Nestle; Laurent Massoptier; Edit Varga; Pieter Jan Stappers; Wiro J. Niessen; Yu Song 003 (J. Digit. Imaging, 2016)

PCA-based groupwise image registration for quantitative MRI. - Wyke Huizinga; Dirk H. J. Poot; Jean-Marie Guyader; R. Klaassen; Bram F. Coolen; Matthijs van Kranenburg; Robert Jan van Geuns; André Uitterdijk; Mathias Polfliet; Jef Vandemeulebroucke; Alexander Leemans; Wiro J. Niessen; et al. (Medical Image Anal., 2016)

MR brain image analysis in dementia: From quantitative imaging biomarkers to ageing brain models and imaging genetics. - Wiro J. Niessen (Medical Image Anal., 2016)

An Automatic 3D Facial Landmarking Algorithm Using 2D Gabor Wavelets. - Markus A. de Jong; Andreas Wollstein; Clifford Ruff; David J. Dunaway; Pirro Hysi; Tim Spector; Fan Liu 004; Wiro J. Niessen; Maarten J. Koudstaal; Manfred Kayser; Eppo B. Wolvius; Stefan Böhringer (IEEE Trans. Image Process., 2016)

4D Ultrasound Tracking of Liver and its Verification for TIPS Guidance. - Jyotirmoy Banerjee; Camiel Klink; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (IEEE Trans. Medical Imaging, 2016)

Carotid Artery Wall Segmentation in Multispectral MRI by Coupled Optimal Surface Graph Cuts. - Andrés M. Arias Lorza; Jens Petersen; Arna van Engelen; Mariana Selwaness; Aad van der Lugt; Wiro J. Niessen; Marleen de Bruijne (IEEE Trans. Medical Imaging, 2016)

Invited Talk: Big Data in Medical Image Computing. - Wiro J. Niessen (Bildverarbeitung für die Medizin, 2017)

A Discriminative Event Based Model for Alzheimer's Disease Progression Modeling. - Vikram Venkatraghavan; Esther E. Bron; Wiro J. Niessen; Stefan Klein 001 (IPMI, 2017)

Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; M. Niestijl; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2017)

Heritability of connectivity and disconnectivity of the brain in a population-based study. - Carolyn D. Langen; Gennady V. Roshchupkin; Hieab H. Adams; Marius de Groot; Frans Vos; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen (ISBI, 2017)

The structural disconnectome: A pathology-sensitive extension of the structural connectome. - Carolyn D. Langen; Meike W. Vernooij; Lotte G. M. Cremers; Wyke Huizinga; Marius de Groot; Mohammad Arfan Ikram; Tonya White; Wiro J. Niessen (ISBI, 2017)

Radiogenomic classification of the 1p/19q status in presumed low-grade gliomas. - Sebastian R. van der Voort; Renske Gahrmann; Martin J. van den Bent; Arnaud J. P. E. Vincent; Wiro J. Niessen; Marion Smits; Stefan Klein 001 (ISBI, 2017)

Fully Automatic and Real-Time Catheter Segmentation in X-Ray Fluoroscopy. - Pierre Ambrosini; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (MICCAI (2), 2017)

GP-Unet: Lesion Detection from Weak Labels with a 3D Regression Network. - Florian Dubost; Gerda Bortsova; Hieab Adams; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (MICCAI (3), 2017)

The Effect of Non-contrast CT Slice Thickness on Thrombus Density and Perviousness Assessment. - Manon L. Tolhuisen; J. Enthoven; E. M. M. Santos; Wiro J. Niessen; L. F. M. Beenen; Diederik W. J. Dippel; Aad van der Lugt; Wim H. van Zwam; Yvo B. W. E. M. Roos; Robert J. van Oostenbrugge; Charles B. L. M. Majoie; Henk A. Marquering (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Laplacian eigenmaps for multimodal groupwise image registration. - Mathias Polfliet; Stefan Klein 001; Wiro J. Niessen; Jef Vandemeulebroucke (Image Processing, 2017)

Evaluating Classifiers for Atherosclerotic Plaque Component Segmentation in MRI. - Arna van Engelen; Marleen de Bruijne; Torben Schneider; Anouk C. van Dijk; M. Eline Kooi; Jeroen Hendrikse; Aart J. Nederveen; Wiro J. Niessen; René M. Botnar (MIUA, 2017)

Contour segmentation of the intima, media, and adventitia layers in intracoronary OCT images: application to fully automatic detection of healthy wall regions. - Guillaume Zahnd; Ayla Hoogendoorn; Nicolas Combaret; Antonios Karanasos; Emilie Péry; Laurent Sarry; Pascal Motreff; Wiro J. Niessen; Evelyn Regar; Gijs van Soest; Frank Gijsen; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2017)

Editorial: MAPPING: MAnagement and Processing of Images for Population ImagiNG. - Michel Dojat; David N. Kennedy; Wiro J. Niessen (Frontiers ICT, 2017)

Using GOMS and NASA-TLX to Evaluate Human-Computer Interaction Process in Interactive Segmentation. - Anjana Ramkumar; Pieter Jan Stappers; Wiro J. Niessen; Sonja Adebahr; Tanja Schimek-Jasch; Ursula Nestle; Yu Song 003 (Int. J. Hum. Comput. Interact., 2017)

Automatic online layer separation for vessel enhancement in X-ray angiograms for percutaneous coronary interventions. - Hua Ma 001; Ayla Hoogendoorn; Evelyn Regar; Wiro J. Niessen; Theo van Walsum (Medical Image Anal., 2017)

Stochastic optimization with randomized smoothing for image registration. - Wei Sun 014; Dirk H. J. Poot; Ihor Smal; Xuan Yang; Wiro J. Niessen; Stefan Klein 001 (Medical Image Anal., 2017)

Randomly Perturbed B-Splines for Nonrigid Image Registration. - Wei Sun 014; Wiro J. Niessen; Stefan Klein 001 (IEEE Trans. Pattern Anal. Mach. Intell., 2017)

A Hidden Markov Model for 3D Catheter Tip Tracking With 2D X-ray Catheterization Sequence and 3D Rotational Angiography. - Pierre Ambrosini; Ihor Smal; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (IEEE Trans. Medical Imaging, 2017)

Reproducible White Matter Tract Segmentation Using 3D U-Net on a Large-scale DTI Dataset. - Bo Li 088; Marius de Groot; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Esther E. Bron (MLMI@MICCAI, 2018)

Towards Robust CT-Ultrasound Registration Using Deep Learning Methods. - Yuanyuan Sun; Adriaan Moelker; Wiro J. Niessen; Theo van Walsum (MLCN/DLF/iMIMIC@MICCAI, 2018)

Classification of malignant and benign liver tumors using a radiomics approach. - Martijn P. A. Starmans; Razvan L. Miclea; Sebastian R. van der Voort; Wiro J. Niessen; Maarten G. Thomeer; Stefan Klein 001 (Image Processing, 2018)

Averaged Stochastic Optimization for Medical Image Registration Based on Variance Reduction. - Wei Sun 014; Dirk H. J. Poot; Xuan Yang; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2018)

Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions. - Lena Maier-Hein; Matthias Eisenmann; Annika Reinke; Sinan Onogur; Marko Stankovic 002; Patrick Scholz 001; Tal Arbel; Hrvoje Bogunovic; Andrew P. Bradley; Aaron Carass; Carolin Feldmann; Alejandro F. Frangi; et al. (CoRR, 2018)

Disease Progression Timeline Estimation for Alzheimer's Disease using Discriminative Event Based Modeling. - Vikram Venkatraghavan; Esther E. Bron; Wiro J. Niessen; Stefan Klein 001; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2018)

Intrasubject multimodal groupwise registration with the conditional template entropy. - Mathias Polfliet; Stefan Klein 001; Wyke Huizinga; Margarethus M. Paulides; Wiro J. Niessen; Jef Vandemeulebroucke (Medical Image Anal., 2018)

A spatio-temporal reference model of the aging brain. - Wyke Huizinga; Dirk H. J. Poot; Meike W. Vernooij; Gennady Roshchupkin; Esther Bron; Mohammad Arfan Ikram; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (NeuroImage, 2018)

Disconnection due to white matter hyperintensities is associated with lower cognitive scores. - Carolyn D. Langen; Lotte G. M. Cremers; Marius de Groot; Tonya White; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij (NeuroImage, 2018)

Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia. - Vikram Venkatraghavan; Florian Dubost; Esther E. Bron; Wiro J. Niessen; Marleen de Bruijne; Stefan Klein 001 (IPMI, 2019)

End-To-End Diagnosis And Segmentation Learning From Cardiac Magnetic Resonance Imaging. - Gerard Snaauw; Dong Gong; Gabriel Maicas; Anton van den Hengel; Wiro J. Niessen; Johan Verjans; Gustavo Carneiro 001 (ISBI, 2019)

Classification Of Prostate Cancer: High Grade Versus Low Grade Using A Radiomics Approach. - Jose M. Castillo T; Martijn P. A. Starmans; Wiro J. Niessen; Ivo Schoots; Stefan Klein 001; Jifke F. Veenland (ISBI, 2019)

Hydranet: Data Augmentation for Regression Neural Networks. - Florian Dubost; Gerda Bortsova; Hieab Adams; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (MICCAI (4), 2019)

Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks. - Florian Dubost; Benjamin Collery; Antonin Renaudier; Axel Roc; Nicolas Posocco; Wiro J. Niessen; Marleen de Bruijne (CSI@MICCAI, 2019)

Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI Across Sites. - Florian Dubost; Max Dünnwald; Denver Huff; Vincent Scheumann; Frank Schreiber; Meike W. Vernooij; Wiro J. Niessen; Martin Skalej; Stefanie Schreiber; Steffen Oeltze-Jafra; Marleen de Bruijne (OR/MLCN@MICCAI, 2019)

A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Marius de Groot; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (MICCAI (3), 2019)

Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network. - Kimberlin M. H. van Wijnen; Florian Dubost; Pinar Yilmaz; Mohammad Arfan Ikram; Wiro J. Niessen; Hieab Adams; Meike W. Vernooij; Marleen de Bruijne (MICCAI (4), 2019)

Automated Image Registration Quality Assessment Utilizing Deep-learning based Ventricle Extraction in Clinical Data. - Florian Dubost; Marleen de Bruijne; Marco Nardin; Adrian V. Dalca; Kathleen L. Donahue; Anne-Katrin Giese; Mark R. Etherton; Ona Wu; Marius de Groot; Wiro J. Niessen; Meike W. Vernooij; Natalia S. Rost; et al. (CoRR, 2019)

Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks. - Florian Dubost; Benjamin Collery; Antonin Renaudier; Axel Roc; Nicolas Posocco; Gerda Bortsova; Wiro J. Niessen; Marleen de Bruijne (CoRR, 2019)

Multiple-correlation similarity for block-matching based fast CT to ultrasound registration in liver interventions. - Jyotirmoy Banerjee; Yuanyuan Sun; Camiel Klink; Renske Gahrmann; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (Medical Image Anal., 2019)

3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI. - Florian Dubost; Hieab Adams; Gerda Bortsova; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (Medical Image Anal., 2019)

Enlarged perivascular spaces in brain MRI: Automated quantification in four regions. - Florian Dubost; Pinar Yilmaz; Hieab Adams; Gerda Bortsova; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (NeuroImage, 2019)

Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling. - Vikram Venkatraghavan; Esther E. Bron; Wiro J. Niessen; Stefan Klein 001 (NeuroImage, 2019)

Patterns of functional connectivity in an aging population: The Rotterdam Study. - Hazel I. Zonneveld; Raimon H. R. Pruim; Daniel Bos; Henri A. Vrooman; Ryan L. Muetzel; Albert Hofman; Serge A. R. B. Rombouts; Aad van der Lugt; Wiro J. Niessen; Mohammad Arfan Ikram; Meike W. Vernooij (NeuroImage, 2019)

Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics. - Natalia Vilor-Tejedor; Mohammad Arfan Ikram; Gennady V. Roshchupkin; Alejandro Cáceres; Silvia Alemany; Meike W. Vernooij; Wiro J. Niessen; Cornelia M. van Duijn; Jordi Sunyer; Hieab H. Adams; Juan R. González (Neuroinformatics, 2019)

Multi-Site Meta-Analysis of Morphometry. - Neda Jahanshad; Joshua Faskowitz; Gennady V. Roshchupkin; Derrek P. Hibar; Boris A. Gutman; Nicholas J. Tustison; Hieab H. H. Adams; Wiro J. Niessen; Meike W. Vernooij; Mohammad Arfan Ikram; Marcel P. Zwiers; Alejandro Arias-Vasquez; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Groupwise Multichannel Image Registration. - Jean-Marie Guyader; Wyke Huizinga; Valerio Fortunati; Dirk H. J. Poot; Jifke F. Veenland; Margarethus M. Paulides; Wiro J. Niessen; Stefan Klein 001 (IEEE J. Biomed. Health Informatics, 2019)

Computer Aided Diagnosis of Clinically Significant Prostate Cancer in Low-Risk Patients on Multi-Parametric MR Images Using Deep Learning. - Muhammad Arif; Ivo G. Schoots; Jose M. Castillo T; Monique J. Roobol; Wiro J. Niessen; Jifke F. Veenland (ISBI, 2020)

Atlas-Based Segmentation of the Human Embryo Using Deep Learning with Minimal Supervision. - Wietske A. P. Bastiaansen; Melek Rousian; Régine P. M. Steegers-Theunissen; Wiro J. Niessen; Anton H. J. Koning; Stefan Klein 001 (ASMUS/PIPPI@MICCAI, 2020)

Transformation optimization and image blending for 3D liver ultrasound series stitching. - Yuanyuan Sun; Taygun Kekec; Adriaan Moelker; Wiro J. Niessen; Theo van Walsum (Image-Guided Procedures, 2020)

Towards Segmentation and Spatial Alignment of the Human Embryonic Brain Using Deep Learning for Atlas-Based Registration. - Wietske A. P. Bastiaansen; Melek Rousian; Régine P. M. Steegers-Theunissen; Wiro J. Niessen; Anton H. J. Koning; Stefan Klein 001 (WBIR, 2020)

When Weak Becomes Strong: Robust Quantification of White Matter Hyperintensities in Brain MRI scans. - Oliver Werner; Kimberlin M. H. van Wijnen; Wiro J. Niessen; Marius de Groot; Meike W. Vernooij; Florian Dubost; Marleen de Bruijne (CoRR, 2020)

Analyzing the effect of APOE on Alzheimer's disease progression using an event-based model for stratified populations. - Vikram Venkatraghavan; Stefan Klein 001; Lana Fani; Leontine S. Ham; Henri A. Vrooman; M. Kamran Ikram; Wiro J. Niessen; Esther E. Bron (CoRR, 2020)

WHO 2016 subtyping and automated segmentation of glioma using multi-task deep learning. - Sebastian R. van der Voort; Fatih Incekara; Maarten M. J. Wijnenga; Georgios Kapsas; Renske Gahrmann; Joost W. Schouten; Rishi Nandoe Tewarie; Geert J. Lycklama; Philip C. de Witt Hamer; Roelant S. Eijgelaar; Pim J. French; Hendrikus J. Dubbink; et al. (CoRR, 2020)

Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (CoRR, 2020)

Cross-Cohort Generalizability of Deep and Conventional Machine Learning for MRI-based Diagnosis and Prediction of Alzheimer's Disease. - Esther E. Bron; Stefan Klein 001; Janne M. Papma; Lize C. Jiskoot; Vikram Venkatraghavan; Jara Linders; Pauline Aalten; Peter Paul De Deyn; Geert Jan Biessels; Jurgen A. H. R. Claassen; Huub A. M. Middelkoop; Marion Smits; et al. (CoRR, 2020)

Weakly supervised object detection with 2D and 3D regression neural networks. - Florian Dubost; Hieab Adams; Pinar Yilmaz; Gerda Bortsova; Gijs van Tulder; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Marleen de Bruijne (Medical Image Anal., 2020)

Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation. - Florian Dubost; Marleen de Bruijne; Marco Nardin; Adrian V. Dalca; Kathleen L. Donahue; Anne-Katrin Giese; Mark R. Etherton; Ona Wu; Marius de Groot; Wiro J. Niessen; Meike W. Vernooij; Natalia S. Rost; et al. (Medical Image Anal., 2020)

Position paper on COVID-19 imaging and AI: From the clinical needs and technological challenges to initial AI solutions at the lab and national level towards a new era for AI in healthcare. - Hayit Greenspan; Raúl San José Estépar; Wiro J. Niessen; Eliot L. Siegel; Mads Nielsen (Medical Image Anal., 2020)

Changes in the intracranial volume from early adulthood to the sixth decade of life: A longitudinal study. - Yaron Caspi; Rachel M. Brouwer; Hugo G. Schnack; Marieke E. van de Nieuwenhuijzen; Wiepke Cahn; René S. Kahn; Wiro J. Niessen; Aad van der Lugt; Hilleke E. Hulshoff Pol (NeuroImage, 2020)

Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging. - Bo Li 088; Marius de Groot; Rebecca M. E. Steketee; Rozanna Meijboom; Marion Smits; Meike W. Vernooij; Mohammad Arfan Ikram; Jiren Liu; Wiro J. Niessen; Esther E. Bron (NeuroImage, 2020)

Spatially Regularized Shape Analysis of the Hippocampus Using P-Spline Based Shape Regression. - Hakim C. Achterberg; Johan J. de Rooi; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Paul H. C. Eilers; Marleen de Bruijne (IEEE J. Biomed. Health Informatics, 2020)

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Mohammad Arfan Ikram; Wiro J. Niessen; Lucas J. van Vliet; Meike W. Vernooij; Frans M. Vos (IEEE Trans. Medical Imaging, 2020)

Automatic Collateral Scoring From 3D CTA Images. - Jiahang Su; Lennard Wolff; Adriaan C. G. M. van Es; Wim H. van Zwam; Charles B. L. M. Majoie; Diederik W. J. Dippel; Aad van der Lugt; Wiro J. Niessen; Theo van Walsum (IEEE Trans. Medical Imaging, 2020)

Projection-Wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis. - Xianjing Liu; Bo Li 088; Esther E. Bron; Wiro J. Niessen; Eppo B. Wolvius; Gennady V. Roshchupkin (MICCAI (5), 2021)

Learning unbiased group-wise registration (LUGR) and joint segmentation: evaluation on longitudinal diffusion MRI. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (Image Processing, 2021)

Reproducible radiomics through automated machine learning validated on twelve clinical applications. - Martijn P. A. Starmans; Sebastian R. van der Voort; Thomas Phil; Milea J. M. Timbergen; Melissa Vos; Guillaume A. Padmos; Wouter Kessels; David Hanff; Dirk J. Grünhagen; Cornelis Verhoef; Stefan Sleijfer; Martin J. van den Bent; et al. (CoRR, 2021)

Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. - Wyke Huizinga; Dirk H. J. Poot; Elisabeth J. Vinke; F. Wenzel; Esther Bron; N. Toussaint; Christian Ledig; Henri A. Vrooman; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Stefan Klein 001 (Frontiers Big Data, 2021)

Recurrent inference machines as inverse problem solvers for MR relaxometry. - Emanoel R. Sabidussi; Stefan Klein 001; Matthan W. A. Caan; Shabab Bazrafkan; Arnold J. den Dekker; Jan Sijbers; Wiro J. Niessen; Dirk H. J. Poot (Medical Image Anal., 2021)

Longitudinal diffusion MRI analysis using Segis-Net: A single-step deep-learning framework for simultaneous segmentation and registration. - Bo Li 088; Wiro J. Niessen; Stefan Klein 001; Marius de Groot; Mohammad Arfan Ikram; Meike W. Vernooij; Esther E. Bron (NeuroImage, 2021)

Analyzing the effect of APOE on Alzheimer's disease progression using an event-based model for stratified populations. - Vikram Venkatraghavan; Stefan Klein 001; Lana Fani; Leontine S. Ham; Henri A. Vrooman; M. Kamran Ikram; Wiro J. Niessen; Esther E. Bron (NeuroImage, 2021)

Progression along data-driven disease timelines is predictive of Alzheimer's disease in a population-based cohort. - Vikram Venkatraghavan; Elisabeth J. Vinke; Esther E. Bron; Wiro J. Niessen; Mohammad Arfan Ikram; Stefan Klein 001; Meike W. Vernooij (NeuroImage, 2021)

autoTICI: Automatic Brain Tissue Reperfusion Scoring on 2D DSA Images of Acute Ischemic Stroke Patients. - Ruisheng Su; Sandra A. P. Cornelissen; Matthijs van der Sluijs; Adriaan C. G. M. van Es; Wim H. van Zwam; Diederik W. J. Dippel; Geert J. Lycklama; Pieter Jan van Doormaal; Wiro J. Niessen; Aad van der Lugt; Theo van Walsum (IEEE Trans. Medical Imaging, 2021)

Virtual extensions improve perception-based instrument alignment using optical see-through devices. - Mohamed Benmahdjoub; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (IEEE Trans. Vis. Comput. Graph., 2021)

ArnovanHilten/GenNet: Release GenNet 1.4. - Arno van Hilten; Steven A. Kushner; Manfred Kayser; Mohammad Arfan Ikram; Hieab H. H. Adams; Caroline C. W. Klaver; Wiro J. Niessen; Gennady V. Roshchupkin (Zenodo, 2021)

Evaluation of marker tracking using mono and stereo vision in Microsoft HoloLens for surgical navigation. - Abdullah Thabit; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (Image-Guided Procedures, 2022)

Towards a 4D Spatio-Temporal Atlas of the Embryonic and Fetal Brain Using a Deep Learning Approach for Groupwise Image Registration. - Wietske A. P. Bastiaansen; Melek Rousian; Régine P. M. Steegers-Theunissen; Wiro J. Niessen; Anton H. J. Koning; Stefan Klein 001 (WBIR, 2022)

Augmented reality navigation for minimally invasive craniosynostosis surgery: a phantom study. - Abdullah Thabit; Mohamed Benmahdjoub; Marie-Lise C. van Veelen; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (Int. J. Comput. Assist. Radiol. Surg., 2022)

Multi-Atlas Segmentation and Spatial Alignment of the Human Embryo in First Trimester 3D Ultrasound. - Wietske A. P. Bastiaansen; Melek Rousian; Régine P. M. Steegers-Theunissen; Wiro J. Niessen; Anton H. J. Koning; Stefan Klein 001 (CoRR, 2022)

Computer-aided diagnosis and prediction in brain disorders. - Vikram Venkatraghavan; Sebastian R. van der Voort; Daniel Bos; Marion Smits; Frederik Barkhof; Wiro J. Niessen; Stefan Klein 001; Esther E. Bron (CoRR, 2022)

Differential Diagnosis and Molecular Stratification of Gastrointestinal Stromal Tumors on CT Images Using a Radiomics Approach. - Martijn P. A. Starmans; Milea J. M. Timbergen; Melissa Vos; Michel Renckens; Dirk J. Grünhagen; Geert J. L. H. van Leenders; Roy S. Dwarkasing; François E. J. A. Willemssen; Wiro J. Niessen; Cornelis Verhoef; Stefan Sleijfer; Jacob J. Visser; et al. (J. Digit. Imaging, 2022)

Spatio-temporal deep learning for automatic detection of intracranial vessel perforation in digital subtraction angiography during endovascular thrombectomy. - Ruisheng Su; Matthijs van der Sluijs; Sandra A. P. Cornelissen; Geert J. Lycklama; Jeannette Hofmeijer; Charles B. L. M. Majoie; Pieter Jan van Doormaal; Adriaan C. G. M. van Es; Danny Ruijters; Wiro J. Niessen; Aad van der Lugt; Theo van Walsum (Medical Image Anal., 2022)

Multimodal markers for technology-independent integration of augmented reality devices and surgical navigation systems. - Mohamed Benmahdjoub; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (Virtual Real., 2022)

Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation. - Mohamed Benmahdjoub; Abdullah Thabit; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (ISMAR-Adjunct, 2023)

AngioMoCo: Learning-Based Motion Correction in Cerebral Digital Subtraction Angiography. - Ruisheng Su; Matthijs van der Sluijs; Sandra A. P. Cornelissen; Wim H. van Zwam; Aad van der Lugt; Wiro J. Niessen; Danny Ruijters; Theo van Walsum; Adrian V. Dalca (MICCAI (7), 2023)

Prior-knowledge-informed deep learning for lacune detection and quantification using multi-site brain MRI. - Bo Li 088; Jeroen de Bresser; Wiro J. Niessen; Matthias van Osch; Wiesje M. van der Flier; Geert Jan Biessels; Meike W. Vernooij; Esther Bron (CoRR, 2023)

Multi-view Contour-constrained Transformer Network for Thin-cap Fibroatheroma Identification. - Sijie Liu; Jingmin Xin; Jiayi Wu 002; Yangyang Deng; Ruisheng Su; Wiro J. Niessen; Nanning Zheng 001; Theo van Walsum (Neurocomputing, 2023)

Deep reinforcement learning for cerebral anterior vessel tree extraction from 3D CTA images. - Jiahang Su; Shuai Li 012; Lennard Wolff; Wim H. van Zwam; Wiro J. Niessen; Aad van der Lugt; Theo van Walsum (Medical Image Anal., 2023)

Evaluation of AR visualization approaches for catheter insertion into the ventricle cavity. - Mohamed Benmahdjoub; Abdullah Thabit; Marie-Lise C. van Veelen; Wiro J. Niessen; Eppo B. Wolvius; Theo van Walsum (IEEE Trans. Vis. Comput. Graph., 2023)

Designing interpretable deep learning applications for functional genomics: a quantitative analysis. - Arno van Hilten; Sonja Katz; Edoardo Saccenti; Wiro J. Niessen; Gennady V. Roshchupkin (Briefings Bioinform., 2024)

CAVE: Cerebral artery-vein segmentation in digital subtraction angiography. - Ruisheng Su; Matthijs van der Sluijs; Yuan Chen; Sandra A. P. Cornelissen; Ruben van den Broek; Wim H. van Zwam; Aad van der Lugt; Wiro J. Niessen; Danny Ruijters; Theo van Walsum (Comput. Medical Imaging Graph., 2024)

An automated framework for brain vessel centerline extraction from CTA images. - Sijie Liu; Ruisheng Su; Jianghang Su; Jingmin Xin; Jiayi Wu 002; Wim H. van Zwam; Pieter Jan van Doormaal; Aad van der Lugt; Wiro J. Niessen; Nanning Zheng 001; Theo van Walsum (CoRR, 2024)

Minimally Interactive Segmentation of Soft-Tissue Tumors on CT and MRI using Deep Learning. - Douwe J. Spaanderman; Martijn P. A. Starmans; Gonnie C. M. van Erp; David F. Hanff; Judith H. Sluijter; Anne-Rose W. Schut; Geert J. L. H. van Leenders; Cornelis Verhoef; Dirk J. Grünhagen; Wiro J. Niessen; Jacob J. Visser; Stefan Klein 001 (CoRR, 2024)

AI in radiological imaging of soft-tissue and bone tumours: a systematic review evaluating against CLAIM and FUTURE-AI guidelines. - Douwe J. Spaanderman; Matthew Marzetti; Xinyi Wan; Andrew F. Scarsbrook; Philip Robinson; Edwin H. G. Oei; Jacob J. Visser; Robert Hemke; Kirsten van Langevelde; David F. Hanff; Geert J. L. H. van Leenders; Cornelis Verhoef; et al. (CoRR, 2024)

The 4D Human Embryonic Brain Atlas. - Wietske A. P. Bastiaansen; Melek Rousian; Anton H. J. Koning; Wiro J. Niessen; Bernadette de Bakker; Régine P. M. Steegers-Theunissen; Stefan Klein 001 (Zenodo, 2024)

The 4D Human Embryonic Brain Atlas: spatiotemporal atlas generation for rapid anatomical changes using first-trimester ultrasound from the Rotterdam Periconceptional Cohort. - Wietske A. P. Bastiaansen; Melek Rousian; Anton H. J. Koning; Wiro J. Niessen; Bernadette de Bakker; Régine P. M. Steegers-Theunissen; Stefan Klein 001 (CoRR, 2025)