A probabilistic context-free grammar for the detection of binding sites from a protein sequence. - Witold Dyrka; Jean-Christophe Nebel (BMC Syst. Biol., 2007)

Ion flux through membrane channels - An enhanced algorithm for the Poisson-Nernst-Planck model. - Witold Dyrka; Andy T. Augousti; Malgorzata Kotulska (J. Comput. Chem., 2008)

Accuracy in Predicting Secondary Structure of Ionic Channels. - Bogumil Konopka; Witold Dyrka; Jean-Christophe Nebel; Malgorzata Kotulska (ICCCI (SCI Volume), 2009)

A stochastic context free grammar based framework for analysis of protein sequences. - Witold Dyrka; Jean-Christophe Nebel (BMC Bioinform., 2009)

Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence. - Witold Dyrka; Jean-Christophe Nebel; Malgorzata Kotulska (PRIB, 2010)

Probabilistic grammatical model for helix-helix contact site classification. - Witold Dyrka; Jean-Christophe Nebel; Malgorzata Kotulska (Algorithms Mol. Biol., 2013)

Machine learning methods for accurate delineation of tumors in PET images. - Jakub Czakon; Filip Drapejkowski; Grzegorz Zurek; Piotr Giedziun; Jacek Zebrowski; Witold Dyrka (CoRR, 2016)

How to measure the topological quality of protein grammars? - Witold Dyrka; François Coste; Olgierd Unold; Lukasz Culer; Agnieszka Kaczmarek (CoRR, 2016)

Quantiprot - a Python package for quantitative analysis of protein sequences. - Bogumil Konopka; Marta Marciniak; Witold Dyrka (BMC Bioinform., 2017)

How to measure the topological quality of protein parse trees? - Mateusz Pyzik; François Coste; Witold Dyrka (ICGI, 2018)

International Conference on Grammatical Inference 2018: Preface. - Olgierd Unold; Witold Dyrka; Wojciech Wieczorek (ICGI, 2018)

Estimating probabilistic context-free grammars for proteins using contact map constraints. - Witold Dyrka; François Coste; Juliette Talibart (CoRR, 2018)

The first MICCAI challenge on PET tumor segmentation. - Mathieu Hatt; Baptiste Laurent; Anouar Ouahabi; Hadi Fayad; Shan Tan; Laquan Li; Wei Lu 025; Vincent Jaouen; Clovis Tauber; Jakub Czakon; Filip Drapejkowski; Witold Dyrka; et al. (Medical Image Anal., 2018)

Unsupervised Grammar Induction for Revealing the Internal Structure of Protein Sequence Motifs. - Olgierd Unold; Mateusz Gabor; Witold Dyrka (AIME, 2020)

Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars. - Witold Dyrka; Marlena Gasior-Glogowska; Monika Szefczyk; Natalia Szulc (BMC Bioinform., 2021)

Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins. - Jakub Wojciechowski; Emirhan Tekoglu; Marlena Gasior-Glogowska; Virginie Coustou; Natalia Szulc; Monika Szefczyk; Marta Kopaczynska; Sven J. Saupe; Witold Dyrka (PLoS Comput. Biol., 2022)