Optimization and Performance Analysis of a Massively Parallel Dynamic Programming Algorithm for Rna Secondary Structure Prediction. - Bruce A. Shapiro; Jih-Hsiang Chen; Tim Busse; Joseph Navetta; Wojciech Kasprzak; Jacob V. Maizel Jr. (Int. J. High Perform. Comput. Appl., 1995)

RNA Structure Analysis: A Multifaceted Approach. - Bruce A. Shapiro; Wojciech Kasprzak; Jin Chu Wu; Kathleen M. Currey (Pattern Discovery in Biomolecular Data, 1999)

Stem Trace: an interactive visual tool for comparative RNA structure analysis. - Wojciech Kasprzak; Bruce A. Shapiro (Bioinform., 1999)

Determination of RNA folding pathway functional intermediates using a massively parallel genetic algorithm (abstract of invited talk). - Bruce A. Shapiro; David Bengali; Wojciech Kasprzak (BIOKDD, 2001)

Exploring RNA Intermediate Conformations with the Massively Parallel Genetic Algorithm. - Bruce A. Shapiro; David Bengali; Wojciech Kasprzak; Jin Chu Wu (Computational Biology and Genome Informatics, 2003)

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. - Eckart Bindewald; Robert Hayes; Yaroslava G. Yingling; Wojciech Kasprzak; Bruce A. Shapiro (Nucleic Acids Res., 2008)

RiboSketch: versatile visualization of multi-stranded RNA and DNA secondary structure. - Jacob S. Lu; Eckart Bindewald; Wojciech Kasprzak; Bruce A. Shapiro (Bioinform., 2018)