External Evaluation of Event Extraction Classifiers for Automatic Pathway Curation: An extended study of the mTOR pathway. - Wojciech Kusa; Michael Spranger (BioNLP, 2017)

DOSSIER at TREC 2021 Clinical Trials Track. - Wojciech Kusa; Yasin Ghafourian (TREC, 2021)

DoSSIER at MedVidQA 2022: Text-based Approaches to Medical Video Answer Localization Problem. - Wojciech Kusa; Georgios Peikos; Oscar Espitia; Allan Hanbury; Gabriella Pasi (BioNLP@ACL, 2022)

Benchmark for Research Theme Classification of Scholarly Documents. - Óscar E. Mendoza; Wojciech Kusa; Alaa El-Ebshihy; Ronin Wu; David Pride; Petr Knoth; Drahomira Herrmannova; Florina Piroi; Gabriella Pasi; Allan Hanbury (SDP@COLING, 2022)

Automation of Citation Screening for Systematic Literature Reviews Using Neural Networks: A Replicability Study. - Wojciech Kusa; Allan Hanbury; Petr Knoth (ECIR (1), 2022)

BigBio: A Framework for Data-Centric Biomedical Natural Language Processing. - Jason A. Fries; Leon Weber; Natasha Seelam; Gabriel Altay; Debajyoti Datta; Samuele Garda; Sunny Kang; Rosaline Su; Wojciech Kusa; Samuel Cahyawijaya; Fabio Barth; Simon Ott; et al. (NeurIPS, 2022)

ORCAS-I: Queries Annotated with Intent using Weak Supervision. - Daria Alexander; Wojciech Kusa; Arjen P. de Vries (SIGIR, 2022)

BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing. - Jason Alan Fries; Leon Weber; Natasha Seelam; Gabriel Altay; Debajyoti Datta; Samuele Garda; Myungsun Kang; Ruisi Su; Wojciech Kusa; Samuel Cahyawijaya; Fabio Barth; Simon Ott; et al. (CoRR, 2022)

ORCAS-I. - Wojciech Kusa; Daria Alexander; Arjen P. de Vries (TU Wien Research Data, 2022)

CRUISE-Screening: Living Literature Reviews Toolbox. - Wojciech Kusa; Petr Knoth; Allan Hanbury (CIKM, 2023)

Outcome-based Evaluation of Systematic Review Automation. - Wojciech Kusa; Guido Zuccon; Petr Knoth; Allan Hanbury (ICTIR, 2023)

CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews. - Wojciech Kusa; Óscar E. Mendoza; Matthias Samwald; Petr Knoth; Allan Hanbury (NeurIPS, 2023)

HEVS-TUW at SemEval-2023 Task 8: Ensemble of Language Models and Rule-based Classifiers for Claims Identification and PICO Extraction. - Anjani Dhrangadhariya; Wojciech Kusa; Henning Müller; Allan Hanbury (SemEval@ACL, 2023)

VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks. - Wojciech Kusa; Aldo Lipani; Petr Knoth; Allan Hanbury (SIGIR, 2023)

DoSSIER at TREC 2023 Clinical Trials Track. - Wojciech Kusa; Patrick Styll; Maximilian Seeliger; Óscar E. Mendoza; Allan Hanbury (TREC, 2023)

Statute-enhanced lexical retrieval of court cases for COLIEE 2022. - Tobias Fink; Gábor Recski; Wojciech Kusa; Allan Hanbury (CoRR, 2023)

An analysis of work saved over sampling in the evaluation of automated citation screening in systematic literature reviews. - Wojciech Kusa; Aldo Lipani; Petr Knoth; Allan Hanbury (Intell. Syst. Appl., 2023)

Effective matching of patients to clinical trials using entity extraction and neural re-ranking. - Wojciech Kusa; Óscar E. Mendoza; Petr Knoth; Gabriella Pasi; Allan Hanbury (J. Biomed. Informatics, 2023)

AustroTox: A Dataset for Target-Based Austrian German Offensive Language Detection. - Pia Pachinger; Janis Goldzycher; Anna Maria Planitzer; Wojciech Kusa; Allan Hanbury; Julia Neidhardt (ACL (Findings), 2024)

Leveraging Cochrane Systematic Literature Reviews for Prospective Evaluation of Large Language Models. - Wojciech Kusa; Harrisen Scells; Moritz Staudinger; Allan Hanbury (ALTARS@ECIR, 2024)

Cross-Linguistic Disease and Drug Detection in Cardiology Clinical Texts: Methods and Outcomes. - Patrick Styll; Leonardo Campillos-Llanos; Wojciech Kusa; Allan Hanbury (CLEF (Working Notes), 2024)

Normalised Precision at Fixed Recall for Evaluating TAR. - Wojciech Kusa; Georgios Peikos; Moritz Staudinger; Aldo Lipani; Allan Hanbury (ICTIR, 2024)

Enhancing Clinical Data Capture: Developing a Natural Language Processing Pipeline for Converting Free Text Admission Notes to Structured EHR Data. - Patrick Styll; Wojciech Kusa; Allan Hanbury (NL4AI@AI*IA, 2024)

A Reproducibility and Generalizability Study of Large Language Models for Query Generation. - Moritz Staudinger; Wojciech Kusa; Florina Piroi; Aldo Lipani; Allan Hanbury (SIGIR-AP, 2024)

ORCAS-I query intent predictor as component of TIRA. - Daria Alexander; Wojciech Kusa; Arjen P. de Vries (WOWS@ECIR, 2024)

Aurora-M: The First Open Source Multilingual Language Model Red-teamed according to the U.S. Executive Order. - Taishi Nakamura; Mayank Mishra; Simone Tedeschi; Yekun Chai; Jason T. Stillerman; Felix Friedrich; Prateek Yadav; Tanmay Laud; Minh Chien Vu; Terry Yue Zhuo; Diganta Misra; Ben Bogin; et al. (CoRR, 2024)

Learning to match patients to clinical trials using large language models. - Maciej Rybinski; Wojciech Kusa; Sarvnaz Karimi; Allan Hanbury (J. Biomed. Informatics, 2024)

Aurora-M: Open Source Continual Pre-training for Multilingual Language and Code. - Taishi Nakamura; Mayank Mishra; Simone Tedeschi; Yekun Chai; Jason T. Stillerman; Felix Friedrich; Prateek Yadav; Tanmay Laud; Minh Chien Vu; Terry Yue Zhuo; Diganta Misra; Ben Bogin; et al. (COLING (Industry), 2025)

ASPIRE: Assistive System for Performance Evaluation in IR. - Georgios Peikos; Wojciech Kusa; Symeon Symeonidis (ECIR (5), 2025)

TimIR: Time-Traveling Through IR History. - Moritz Staudinger; Wojciech Kusa; Florina Piroi; Andreas Rauber; Allan Hanbury (ECIR (4), 2025)

ConECT Dataset: Overcoming Data Scarcity in Context-Aware E-Commerce MT. - Mikolaj Pokrywka; Wojciech Kusa; Mieszko Rutkowski; Mikolaj Koszowski (CoRR, 2025)

PL-Guard: Benchmarking Language Model Safety for Polish. - Aleksandra Krasnodebska; Karolina Seweryn; Szymon Lukasik; Wojciech Kusa (CoRR, 2025)