Searching for tRNA genes in DNA sequences–an IBM microcomputer program. - P. Wozniak; Wojciech Makalowski (Comput. Appl. Biosci., 1990)

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Matilde Ippedico; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 1999)

Genome Research: The Second Decade. a Report on the XI Cold Spring Harbor Laboratory Meeting on Genome Mapping and Sequencing, May 13-17, 1998, Cold Spring Harbor, NY. - Sarah J. Wheelan; Wojciech Makalowski (Comput. Chem., 2000)

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 2000)

Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs. - Alessandra Larizza; Wojciech Makalowski; Graziano Pesole; Cecilia Saccone (Comput. Chem., 2002)

Overlapping genes in vertebrate genomes. - Izabela Makalowska; Chiao-Feng Lin; Wojciech Makalowski (Comput. Biol. Chem., 2005)

DED: Database of Evolutionary Distances. - Vamsi Veeramachaneni; Wojciech Makalowski (Nucleic Acids Res., 2005)

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. - Akihiro Matsuya; Ryuichi Sakate; Yoshihiro Kawahara; Kanako O. Koyanagi; Yoshiharu Sato; Yasuyuki Fujii; Chisato Yamasaki; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Kaori Yamaguchi; Toshinori Endo; et al. (Nucleic Acids Res., 2008)

TEclass - a tool for automated classification of unknown eukaryotic transposable elements. - György Abrusán; Norbert Grundmann; Luc DeMester; Wojciech Makalowski (Bioinform., 2009)

Genome Evolution. - Izabela Makalowska; Igor B. Rogozin; Wojciech Makalowski (Adv. Bioinformatics, 2010)

DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites. - Marcin Jakalski; Hiroyuki Wakaguri; Tabea G. Kischka; Yoshifumi Nishikawa; Shin-ichiro Kawazu; Makoto Matsubayashi; Fumiya Kawahara; Naotoshi Tsuji; Shinuo Cao; Fujiko Sunaga; Xuenan Xuan; Kazuhiro Okubo; et al. (Nucleic Acids Res., 2015)

The new uORFdb: integrating literature, sequence, and variation data in a central hub for uORF research. - Felix Manske; Lynn Ogoniak; Lara Jürgens; Norbert Grundmann; Wojciech Makalowski; Klaus Wethmar (Nucleic Acids Res., 2023)