A novel method for automatic and reliable functional annotation of proteins. - Wolfgang Fleischmann; Steffen Möller; Alain Gateau; Rolf Apweiler (German Conference on Bioinformatics, 1998)

A novel method for automatic functional annotation of proteins. - Wolfgang Fleischmann; Steffen Möller; Alain Gateau; Rolf Apweiler (Bioinform., 1999)

Swissknife - 'lazy parsing' of SWISS-PROT entries. - Henning Hermjakob; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 1999)

EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. - Steffen Möller; Ulf Leser; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 1999)

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. - Margaret Biswas; Rolf Apweiler; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Evgeni M. Zdobnov (German Conference on Bioinformatics, 2000)

InterPro-an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Bioinform., 2000)

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. - Ernst Kretschmann; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 2001)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Nucleic Acids Res., 2001)

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Evgeni M. Zdobnov (Nucleic Acids Res., 2001)

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. - Evgenia V. Kriventseva; Wolfgang Fleischmann; Evgeni M. Zdobnov; Rolf Apweiler (Nucleic Acids Res., 2001)

Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Evgenia V. Kriventseva; Nicola J. Mulder (Gene Regulations and Metabolism, 2002)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

Interactive InterPro-based comparisons of proteins in whole genomes. - Alexander Kanapin; Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Florence Servant; et al. (Bioinform., 2002)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

NEWT, a new taxonomy portal. - I. Q. H. Phan; Sandrine Pilbout; Wolfgang Fleischmann; Amos Bairoch (Nucleic Acids Res., 2003)

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. - Manuela Pruess; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler (Nucleic Acids Res., 2003)

UniProt archive. - Rasko Leinonen; Federico Garcia Diez; David Binns; Wolfgang Fleischmann; Rodrigo Lopez; Rolf Apweiler (Bioinform., 2004)

IntEnz, the integrated relational enzyme database. - Astrid Fleischmann; Michael Darsow; Kirill Degtyarenko; Wolfgang Fleischmann; Sinéad Boyce; Kristian B. Axelsen; Amos Bairoch; Dietmar Schomburg; Keith F. Tipton; Rolf Apweiler (Nucleic Acids Res., 2004)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)