GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. - Wolfgang Gerlach; Robert Giegerich (Bioinform., 2006)

Compressed suffix tree - a basis for genome-scale sequence analysis. - Niko Välimäki; Wolfgang Gerlach; Kashyap Dixit; Veli Mäkinen (Bioinform., 2007)

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. - Wolfgang Gerlach; Sebastian Jünemann; Felix Tille; Alexander Goesmann; Jens Stoye (BMC Bioinform., 2009)

Engineering a compressed suffix tree implementation. - Niko Välimäki; Veli Mäkinen; Wolfgang Gerlach; Kashyap Dixit (ACM J. Exp. Algorithmics, 2009)

Taxonomic classification of metagenomic sequences. - Wolfgang Gerlach (2012)

A scalable data analysis platform for metagenomics. - Wei Tang 001; Jared Wilkening; Narayan Desai; Wolfgang Gerlach; Andreas Wilke; Folker Meyer (IEEE BigData, 2013)

Workload characterization for MG-RAST metagenomic data analytics service in the cloud. - Wei Tang 001; Jared Bischof; Narayan Desai; Kanak Mahadik; Wolfgang Gerlach; Travis Harrison; Andreas Wilke; Folker Meyer (IEEE BigData, 2014)

Skyport: container-based execution environment management for multi-cloud scientific workflows. - Wolfgang Gerlach; Wei Tang 001; Kevin P. Keegan; Travis Harrison; Andreas Wilke; Jared Bischof; Mark D'Souza; Scott Devoid; Daniel E. Murphy-Olson; Narayan Desai; Folker Meyer (DataCloud@SC, 2014)

Shock: Active Storage for Multicloud Streaming Data Analysis. - Andreas Wilke; Wolfgang Gerlach; Travis Harrison; Tobias Paczian; Wei Tang 001; William L. Trimble; Jared Wilkening; Narayan Desai; Folker Meyer (BDC, 2015)

Container Orchestration for Scientific Workflows. - Wolfgang Gerlach; Wei Tang 001; Andreas Wilke; Dan Olson; Folker Meyer (IC2E, 2015)

A RESTful API for Accessing Microbial Community Data for MG-RAST. - Andreas Wilke; Jared Bischof; Travis Harrison; Tom Brettin; Mark D'Souza; Wolfgang Gerlach; Hunter Matthews; Tobias Paczian; Jared Wilkening; Elizabeth M. Glass; Narayan Desai; Folker Meyer (PLoS Comput. Biol., 2015)

A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST. - Caitlin Ross; Misbah Mubarak; John Jenkins; Philip H. Carns; Christopher D. Carothers; Robert B. Ross; Wei Tang 001; Wolfgang Gerlach; Folker Meyer (SIGSIM-PADS, 2016)

The MG-RAST metagenomics database and portal in 2015. - Andreas Wilke; Jared Bischof; Wolfgang Gerlach; Elizabeth M. Glass; Travis Harrison; Kevin P. Keegan; Tobias Paczian; William L. Trimble; Saurabh Bagchi; Ananth Grama; Somali Chaterji; Folker Meyer (Nucleic Acids Res., 2016)

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. - Ashraf Mahgoub; Paul Wood; Sachandhan Ganesh; Subrata Mitra; Wolfgang Gerlach; Travis Harrison; Folker Meyer; Ananth Grama; Saurabh Bagchi; Somali Chaterji (Middleware, 2017)

On the way to research objects for environmental genomics (or metagenomics). - Folker Meyer; Robert D. Finn; Wolfgang Gerlach; Alex L. Mitchell; Travis Harrison; Andreas Wilke (RO, 2018)

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. - Folker Meyer; Saurabh Bagchi; Somali Chaterji; Wolfgang Gerlach; Ananth Grama; Travis Harrison; Tobias Paczian; William L. Trimble; Andreas Wilke (Briefings Bioinform., 2019)

The MG-RAST API explorer: an on-ramp for RESTful query composition. - Tobias Paczian; William L. Trimble; Wolfgang Gerlach; Travis Harrison; Andreas Wilke; Folker Meyer (BMC Bioinform., 2019)