Automatic reconstruction of molecular and genetic networks from discrete time series data. - Markus Durzinsky; Annegret Wagler; Robert Weismantel; Wolfgang Marwan (Biosyst., 2008)

A mathematical approach to solve the network reconstruction problem. - Wolfgang Marwan; Annegret Wagler; Robert Weismantel (Math. Methods Oper. Res., 2008)

Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments. - Monika Heiner; Sebastian Lehrack; David R. Gilbert; Wolfgang Marwan (Trans. Comp. Sys. Biology, 2009)

Petri Net Modeling via a Modular and Hierarchical Approach Applied to Nociception. - Mary Ann Blätke; Sonja Meyer 003; Christoph Stein; Wolfgang Marwan (ACSD/Petri Nets Workshops, 2010)

Modular and Hierarchical Modelling Concept for Large Biological Petri Nets Applied to Nociception. - Mary Ann Blätke; Wolfgang Marwan (AWPN, 2010)

Snoopy - a unifying Petri net framework to investigate biomolecular networks. - Christian Rohr; Wolfgang Marwan; Monika Heiner (Bioinform., 2010)

A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. - Stefan Streif; Dieter Oesterhelt; Wolfgang Marwan (BMC Syst. Biol., 2010)

Reconstruction of extended Petri nets from time series data and its application to signal transduction and to gene regulatory networks. - Markus Durzinsky; Annegret Wagler; Wolfgang Marwan (BMC Syst. Biol., 2011)

Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. - Wolfgang Marwan; Annegret Wagler; Robert Weismantel (Nat. Comput., 2011)

Automatic network reconstruction using ASP. - Markus Durzinsky; Wolfgang Marwan; Max Ostrowski; Torsten Schaub; Annegret Wagler (Theory Pract. Log. Program., 2011)

JAK-STAT Signalling as Example for a Database-Supported Modular Modelling Concept. - Mary Ann Blätke; Anna Dittrich; Monika Heiner; Fred Schaper; Wolfgang Marwan (CMSB, 2012)

Predicting Phenotype from Genotype through Automatically Composed Petri Nets. - Mary Ann Blätke; Monika Heiner; Wolfgang Marwan (CMSB, 2012)

A module-based approach to biomodel engineering with Petri nets. - Wolfgang Marwan; Mary Ann Blätke (WSC, 2012)

A Petri-Net-Based Framework for Biomodel Engineering. - Mary Ann Blätke; Christian Rohr; Monika Heiner; Wolfgang Marwan (Large-Scale Networks in Engineering and Life Sciences, 2014)

Integrating a priori knowledge in automatic network reconstruction. - Marie C. F. Favre; Wolfgang Marwan; Annegret Wagler (BioPPN@Petri Nets, 2014)

EXACT2: the semantics of biomedical protocols. - Larisa N. Soldatova; Daniel Nadis; Ross D. King; Piyali S. Basu; Emma Haddi; Véronique Baumlé; Nigel J. Saunders; Wolfgang Marwan; Brian B. Rudkin (BMC Bioinform., 2014)

A Systems Genetics Approach to the Sporulation Control Network in Physarum polycephalum. - Wolfgang Marwan (BICT, 2015)

Disentangling a complex response in cell reprogramming and probing the Waddington landscape by automatic construction of Petri nets. - Viktoria Rätzel; Britta Werthmann; Markus Haas; Jan Strube 002; Wolfgang Marwan (Biosyst., 2020)