Structural Local Multiple Alignment of RNA. - Wolfgang Otto 001; Sebastian Will; Rolf Backofen (German Conference on Bioinformatics, 2008)

Phylogenetic Footprinting and Consistent Sets of Local Aligments. - Wolfgang Otto 001; Peter F. Stadler; Sonja J. Prohaska (CPM, 2011)

Transcriptional Regulatory Elements: Detection and Evolutionary Analysis - Wolfgang Otto 001 (2011)